Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04412 ATGGGGAGTAGGGTTAGGCACGGGAGAAGATTACAGAAGATAATGAAGTGCCTGTGCCCAGGGGAGCCGGTGAGAAGAGCAGATGAAATGGTTGCTTCCTCGGAGTCGCTTGCAACCAAGGATTATTATTCCTCAACGGCAAGTGGGCTTTCTGGCCTAGATGGACAAGTTGAGAGTAGGCCAGATTCTGGCAACATAGAAGAAGCCGAATCATCCTTGCGTGAAAGTGGTATCTTGAACTATGAGGAAGCTAGAGCTTTGTTAGGTAGATATGAATATCAAGAAGGAAATATAGAAGCTGCATTACATGTTTTTGAGGGAATAGACATAGGCGCTTTGTCTCCCAAGATAAAAATTTTCCTTGCCAAAAACAGAGAGCGTCGTAAGAGACGTTCCCGGAATTATGCTGCTCCACCAATGTCTATACACACGGCTGGATTACTGTTAGAAGCAGTTTTCCTGAAAGTAAAATGTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCAGCTCAAACATGCCAAGTTATTCTGGACATAATTGAGTCTTCAGTACCTGAAGGCTTGCCTGAAAATTTTGGTGCTGAATCTAAGTTGCAGGAGACTTTGAGTAAGGCAGTTGAGCTACTTCCGGAACTATGGAAACTTGCTGATTGTCCACGCGAAGTTATTTTGTCTTACCGACATGCACTCCTTCATCAATGGAATCTTGATGCAGAGACCATAGCAAAAATTCAGAAAGAATTTGTTGTTTTTCTTCTGTATAGTGGAGGGGAAGAAATCCCCCCAAATCTTCGTTCCCATATGGACAGTTCATTTGTGCCCAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTCTGAATAAAATTCAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTTTCTATTTCAGGAGATTTGACAGCTTTAGCCAATCAATGGGAAGAATTACTCCCTGGTACTATCAATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTTAGAAAATTGTTGAGTAGCAGAGAGGACCCAAAACATGTTCCTGCTTTGTTAATAGCTTCTAAGATATGTTGTGAGAACCCTGATCTTGCAAATGATGGAGTAAGCTTTGCACGCAGAGTGCTTGGGAATTTAGATGGAAGATGTGAGCAGTTGGAAAGTCTGGCCAATTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTAGCTATTTCTAATTCTGAGATGTTTGAGAGACAATCTGAGGCACTTCATTACCTGGAAACTGCCAGCAGAATGATCAGAATGAGTGACCCTCTTGTACTCTACTATTTCAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATGCTGCATATCAATATGCAAAACGCCTTTTAAACTTGGAAGCTGGGTCTAATATTAAAGGGTGGTTATTGTTAGCCCGGATATTATCAGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTTGACGCTGCTTTGGATCGAACAGGAATATGGGATCAAGGAGATCTGTTGCGAACAAAAGCTAAACTGCAAATTGCACAGGGCCAGTTTTCAAGTGCCATTGAAACATATATTCAGCTTCTTGCTATTCTTCTAGTTCAGAGAAAAACTTTTGGTTCAAGAAAGAAGCTATATAAGGACTACAGAGATCATGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTTATGTATACATAAGTCTGTCACAGTGGCATGATGCAGAGATGTGTCTTTCCAAATCCAAAGCCATCAAACTCTACTCTGCTTCCAGATGTCATGTAATAGGCACAATGTACCAAGCAAAGTGCCTTTACAAAGAGGCTCTAAAAGCTTTTCGTGATGCTTTGAACATTGATCCTGGACATGTCTCTAGCTTGATCTCCACTGCCGTGGTTCTTAGACGGTGCAGTAATCAATCAGATCCTACTGTCAGAAGCTTTCTGATGGATGCACTGCGGCATGACAGATTTAATGCTTCTGCTTGGTATAATCTTGGCATTCTTCACAAGGCTGAAGGTAGAATGCTAGAAGCTGCAGAATGTTTTCAGGCAGCAAACTTTCTTGAAGAATCAGCACCAGTTGAACCTTTCAGATGA 2181 0.4136 MGSRVRHGRRLQKIMKCLCPGEPVRRADEMVASSESLATKDYYSSTASGLSGLDGQVESRPDSGNIEEAESSLRESGILNYEEARALLGRYEYQEGNIEAALHVFEGIDIGALSPKIKIFLAKNRERRKRRSRNYAAPPMSIHTAGLLLEAVFLKVKCLQVLGRFKEAAQTCQVILDIIESSVPEGLPENFGAESKLQETLSKAVELLPELWKLADCPREVILSYRHALLHQWNLDAETIAKIQKEFVVFLLYSGGEEIPPNLRSHMDSSFVPRNNIEEAILLLMILLRKVSLNKIQWDPSILDHLSFALSISGDLTALANQWEELLPGTINRRERYHALALCYYGAGKDLVALDLLRKLLSSREDPKHVPALLIASKICCENPDLANDGVSFARRVLGNLDGRCEQLESLANCLLGVSLSTHSKLAISNSEMFERQSEALHYLETASRMIRMSDPLVLYYFSLECAEQRKLDAAYQYAKRLLNLEAGSNIKGWLLLARILSAQKQFLDAESIVDAALDRTGIWDQGDLLRTKAKLQIAQGQFSSAIETYIQLLAILLVQRKTFGSRKKLYKDYRDHARNLEVEIWHDLAYVYISLSQWHDAEMCLSKSKAIKLYSASRCHVIGTMYQAKCLYKEALKAFRDALNIDPGHVSSLISTAVVLRRCSNQSDPTVRSFLMDALRHDRFNASAWYNLGILHKAEGRMLEAAECFQAANFLEESAPVEPFR. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04412 726 SUPERFAMILY TPR-like 529 713 IPR011990 GO:0005515
Seca2g04412 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Seca2g04412 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Seca2g04412 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Seca2g04412 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Seca2g04412 726 SMART tpr_5 527 560 IPR019734 GO:0005515
Seca2g04412 726 Pfam Tetratricopeptide repeat 687 713 IPR019734 GO:0005515
Seca2g04412 726 Gene3D Tetratricopeptide repeat domain 142 612 IPR011990 GO:0005515
Seca2g04412 726 Gene3D Tetratricopeptide repeat domain 614 717 IPR011990 GO:0005515
Seca2g04412 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Seca2g04412 726 MobiDBLite consensus disorder prediction 47 71 - -
Seca2g04412 726 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515
Seca2g04412 726 PANTHER PROTEIN NPG1 15 726 IPR043376 -
Seca2g04412 726 SUPERFAMILY TPR-like 454 555 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04412 Seca-Chr2 129374566 129381575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04412 9 726 Calmodulin-binding Proteins AT4G28600 57.084 0.0 765
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04412 2 129374566 129381575 Seca8g05595 8 147459122 147464428 PCT