Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04401 ATGGATCATGTGATTGCTGGGAAGTTTAAACTGGGAAGGAAAATCGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTCAAACTGGAACCTGTGAAGACCAAGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAGGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGCAATTGACCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAACTTTTTAATGGGCCTAGGACGCAAAGCAAACCAGGTGTATATCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTTGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACAAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAGATGTCAACTCCCATAGAGGTGCTCTGCAAATCATATCCCTCCGAGTTTGTATCATACTTCCATTACTGCCGATCATTGCGGTTTGAGGACAAGCCTGACTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCACAGATTGGTGGCAGCTCTAGAGGGCGGCATCATGACAGTGGCAAGGCAGCTATGAATGCAGGACCATCTGTGCAAAAGCCAGAAAAGATCTCAGTTGGGAAAGAGATTCGAGAGAAATTCTCTGGTGCTGTTGAGGCATTCTCGCGGAGGAACCCAACAAGTTCTAGTCCTCGTGGTGATCACTCCAAACATAGGAGTTTTGAGGATGTAGCAGTGCACAAGGATGTGTATCATGATCAAGAGAAGGGACGCAACTCGTCTCGATATGGCAGCAGTTCAAGAAGAGCCATAATATCATCAACCAGGCCAAGTTCCTCAGCTGATCATACTGACAGCCGTACTGGCCGGTTAACATCAAGTGGTAGCCGTCCATCTACTGCACATAGAATTCAACCGATGTATGACACCAAACAACCATCTTTCACGCGCTCTGGATCTACTAGAGGCAATCGCGACGATCCTTTGCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1386 0.4358 MDHVIAGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSRGRHHDSGKAAMNAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPRGDHSKHRSFEDVAVHKDVYHDQEKGRNSSRYGSSSRRAIISSTRPSSSADHTDSRTGRLTSSGSRPSTAHRIQPMYDTKQPSFTRSGSTRGNRDDPLRSFELLSIRK. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04401 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca2g04401 461 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04401 461 MobiDBLite consensus disorder prediction 382 444 - -
Seca2g04401 461 FunFam Putative Casein kinase I 1 85 - -
Seca2g04401 461 CDD STKc_CK1_delta_epsilon 8 282 - -
Seca2g04401 461 PANTHER CASEIN KINASE-RELATED 9 383 - -
Seca2g04401 461 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04401 461 MobiDBLite consensus disorder prediction 352 381 - -
Seca2g04401 461 MobiDBLite consensus disorder prediction 445 461 - -
Seca2g04401 461 MobiDBLite consensus disorder prediction 326 340 - -
Seca2g04401 461 FunFam Casein kinase 1-like protein 1 331 - -
Seca2g04401 461 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca2g04401 461 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Seca2g04401 461 MobiDBLite consensus disorder prediction 301 461 - -
Seca2g04401 461 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Seca2g04401 461 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04401 Seca-Chr2 129197398 129203074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04401 2 213 Miscellaneous Gene Families AT1G29230 27.397 6.19e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca2g04401 Pkinase 2.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04401 K08960 - gmx:100781494 835.869