Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04399 ATGGATTCTGCGAGGAGTTGGTTACATAAATTCCAACCACGAGATAGAGTGAGGCCCTCTACGAGGAGGAAGGATGATGTTAATGGTGGAAGCGAAGTTTCAAATGATCCCCTTGATGAAGCAGATCTTTCAAATATAACAAAGCAGAAGGTTGCCGCAGCCAAGCAGTATATTGAGAACCACTACAAGGAGCAAATGAAGAACCTTCATGAAAGGAAAGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTTTCCGAGGAAGATCAAAATAATCTGCTAAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTCCAAAGGCATAAAATGGGTGTTGATGATTTCGAGTTATTGACTATGATCGGAAAAGGTGCATTTGGGGAGGTCAGAGTTTGTAGGGAAAAGACTACAGGTCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAACTGCATAGTCAAACTTTATTGTTCTTTTCAGGATGATGAGTATCTATATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACCCTACTTATGAGAAAAGATATCTTGACTGAAGATGAAGCCCGATTTTATGTAGGAGAAACCGTCCTTGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAACTTATTGCTTGATAGATACGGACACGTGAGACTATCAGATTTTGGATTATGTAAACCATTAGATTGCAGTACACTTGAAGAAGCAGATTTTTCCACTGGCCAAAATGTTAATGGATCTATGCAGAATGAAGAACGTATAGGTCCAAAACGCACACAACAAGAACAGTTGGAACACTGGCAGAAGAATAGAAGGACACTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTAGTGGGATATCCGCCATTTTATTCTGATGATCCAATGTCAACATGTAGGAAGTAA 1110 0.391 MDSARSWLHKFQPRDRVRPSTRRKDDVNGGSEVSNDPLDEADLSNITKQKVAAAKQYIENHYKEQMKNLHERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHVRLSDFGLCKPLDCSTLEEADFSTGQNVNGSMQNEERIGPKRTQQEQLEHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRK. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04399 369 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Seca2g04399 369 ProSiteProfiles Protein kinase domain profile. 120 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04399 369 CDD MobB_NDR_LATS-like 54 115 - -
Seca2g04399 369 SMART serkin_6 120 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04399 369 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Seca2g04399 369 Gene3D Transferase(Phosphotransferase) domain 1 315 368 - -
Seca2g04399 369 Gene3D Transferase(Phosphotransferase) domain 1 204 276 - -
Seca2g04399 369 MobiDBLite consensus disorder prediction 1 44 - -
Seca2g04399 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Seca2g04399 369 FunFam Probable serine/threonine-protein kinase cot-1 203 369 - -
Seca2g04399 369 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 369 - -
Seca2g04399 369 SUPERFAMILY Protein kinase-like (PK-like) 102 368 IPR011009 -
Seca2g04399 369 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Seca2g04399 369 Pfam Protein kinase domain 121 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04399 369 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04399 Seca-Chr2 129150624 129161896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04399 1 369 AGC Kinase Gene Family AT1G03920 79.016 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca2g04399 Pkinase 1.9e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04399 K08790 - gmx:100783286 696.427