Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04398 ATGGCAGACCCTGCAGCCATCTACGAGTTTCTGAAGCAGCAGCCATCTTCTGCTTCAAGAGCAGGTGCAAAGAGAGCACAACCCCACCCACCTTCCTCTACCCGCACCTTTCAATGTCACTTTTGCCACCGCAAGTTCTACACTTCTCAAGCTCTTGGTGGCCACCAGAATGCTCACAAGCTTGAGAGAGCAGCTGCAAGAAGAACCAACATCCCTTTTCACCACCATAGTGTGTCACTCCCATCACCACCACCACCATTGCCATTGCCATTAGAGTCTTCTTTCAAGGTCACCGAACCCAACAACAAGCCAATGACCATGACCATGACTGTGCCTGAATTTGAACCCGCAAGCCGTTTCTTCCACCATCCTTGCTGGATTGAAGTGGAACCATTGCAGTTTTCGACCCATCAACACGTTGCAACCACTCTCCCTCCTCTTCCATTCCATGCTGCTAGTGGTGCTTCTTCCACTTCCACTTCCACCCCTCAACATGTTATGGCTGCTCCTGATGCTTCTGACCATGTCAATCTCGACCTCACTCTTCGCTTGTGA 555 0.5081 MADPAAIYEFLKQQPSSASRAGAKRAQPHPPSSTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRTNIPFHHHSVSLPSPPPPLPLPLESSFKVTEPNNKPMTMTMTVPEFEPASRFFHHPCWIEVEPLQFSTHQHVATTLPPLPFHAASGASSTSTSTPQHVMAAPDASDHVNLDLTLRL. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04398 184 PANTHER ZINC FINGER PROTEIN JAGGED 14 184 IPR045320 GO:0003700
Seca2g04398 184 MobiDBLite consensus disorder prediction 13 35 - -
Seca2g04398 184 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Seca2g04398 184 Gene3D Classic Zinc Finger 18 77 - -
Seca2g04398 184 SUPERFAMILY beta-beta-alpha zinc fingers 34 64 IPR036236 -
Seca2g04398 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04398 Seca-Chr2 129147049 129147603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04398 31 69 C2H2 Transcription Factor Family AT5G14010 76.923 1.86e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04398 - - cam:101499960 168.318