Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04395 ATGGGTCTGAGAGACATCGGTGCTTCACTACCCCCTGGGTTTCGGTTTTATCCGAGTGATGAAGAATTGGTGTGCCATTACCTTTACAAAAAGATCACAAATGAGGAACTTCAGAAAGGAACCTTGGTTGAAATTGACTTGCACATATGCGAACCATGGCAACTTCCTGAGGTGGCTAAGCTCAATGCAAATGAGTGGTATTTCTTCAGCTTCCGGGACCGCAAATATGCAACTGGGTTTAGAACCAACAGGGCCACCACATCAGGGTATTGGAAAGCAACAGGGAAGGATCGAACGGTGCTTGATCCAATCACACAGGAGGTTGTAGGGATGAGGAAGACATTGGTTTTCTATCGGAACAGGGCTCCAAATGGCATCAAAACAGGATGGATTATGCATGAGTTTCGCTTGGAGACCCCACACATGCCTCCTAAGGAGGACTGGGTCTTGTGCAGAGTCTTCCACAAAAGCAAAGATGATAACACTTCCAAACTCAACACACAATCACTCATGTATGAGACAACACCTCCTCCATCCCTAACTTTGGCTTCATCATCTCCAACCAACCAAACCATGCCTGGTGGTTATAATAATAGATCACTTGCCTCTTTCTCTTCCTCTATGGCAACCCTTCACCATCATTTCAACCCCAACCAAAACCCTTCTTCCATGGATCTCCTTCACTTTTCTCGTGAAACAAACACAAACAATAGCACCGTTACTCAAATTAGTTCAAGAGGTCATGATGATGGATATGGGTTCTTATGGGACATGGATTTGGAAGAGAATAATAGCCTAGAAGATGGCGTGGCTTCAAACTTGGACGCAATGAGATTCGAGGTTGATAATAATAATAATAATAATCATATGGTCTTGATATAA 882 0.4365 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEELQKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPITQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKDDNTSKLNTQSLMYETTPPPSLTLASSSPTNQTMPGGYNNRSLASFSSSMATLHHHFNPNQNPSSMDLLHFSRETNTNNSTVTQISSRGHDDGYGFLWDMDLEENNSLEDGVASNLDAMRFEVDNNNNNNHMVLI. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04395 293 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Seca2g04395 293 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 228 - -
Seca2g04395 293 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Seca2g04395 293 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Seca2g04395 293 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04395 Seca-Chr2 129065895 129071829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04395 6 175 NAC Transcription Factor Family AT1G56010 55.056 4.25e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g04395 NAM 9.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04395 - - gmx:100806284 472.626