Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04391 ATGATGGAAGCAGACTACGGCAGTAATTGTTCCAAATTTGAGAAGATGGAAAATCTTACAATTCCCCCTGGTTTTGCATCCCTAACATCTTTTATTTTGGAAAAGAGCAAAAAGGTTAAGAAAACCAAAAAATCTACAACCTTTCCAACTGCATCTGGACAAGAGCCAATCTGCATGAAGACTAAACCTGAGATGAATGACACTACTGCATATAATCGACCATGGATAATATTTGACCAGAGCAACCACAAACCTGAGGAATCTCAAATGGAGCGTCTTCATATGGATGTCCCTTTAAATTCTTGTCGTCCAAAGGGGACCATACATGGATGTCCTAACTGCAGTGATTGTCTGAAGGTAACAGCAAGGTGGCGTCCTGAGGATGCAAGAAGAGAAGTTTTGGAAGAAGTTCCTATTTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGCTCCAAAGCAGAACCTCATGGAATTTGTCGTATTGTCCCTCCTACTTGCTGGAAACCACCATGTTTTCTTGAGAAAAAAAACTTTTGGGAAAACTCCAAATTTGCTGCTCAGATTCAGCGGATTGATGGACACCAAGTTCAGCATGCAGCAGAAATTATGGCTAGTTCTCATGAAAACACAGAGACCAAGAGAAGAGGCGCAAAAGTAACTTTGGACTCTCAGATTGTTAACAGAAGCACCAGCACCACAAATAACCAGAATGTTGAAGACTTTGACAGTGGGTCTGAACCTGGTCCTAAATTCAGTCTCAAAACATTTAAGAAATTTGCAGATGAATTCAAGATCCAATATTTCAATTACAAGGGTAAGGATAAGGATAAGATTATTGGTTCTGATATAAATTTAACTAGACGTCAACAGCAGTGGGAGCCATCTGTTGAGAATATTGAGGGTGAATATGGACGGATTGCTCAAAATCCAACTGAAGAAATTGAGGTGCTTTGTGGTAATGCTTTGGATGCTGGAGATTTTGGCAGTGGATTTCCAACAGTTTCTGATCCTTTGGAGGCATACACTTGGCCTGAATATTTGAAATCTGGATGGAACTTAAATAATATACTTTCATGCTCAGGTTCTCTTCTTTCTTTTGAAAGCTCTGAAGCTTCACATCATTTTGTCCCTCGGATTCATGTGGGAATGTGCTTTTCTCCACTCAACTGGAAAGTTGAAGAGCACCAATTATACTCATTATGTTACATGCATTTGGGTGAACCCAGAGTGTGGTATAGTGTTCCTGGAACATTTGTTGTTGACTTCGAAACAATTTGGAAGAAGTATCTCCCAGATATGAATGCAGGACAGCCCAATATGTGTGATAATTTGGTGATGCAATTATCCTGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGCGTTCAGTATCCTCGAGAATTTGTTCTTGTCTTCCCTGGAGCATATCATTCCGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTGTCGAGTGGCTGCTCCATGGACAGAATGTTGTTGAGATATATTCTGAACAGAGGAGAAAAACATTAATTTCATATGACAAGTTTTTGCTGGGGGCAGCAAGGGAAGCTGTGAGGGCCCAATGGGAAACTGATCTGTGTATGAAGAGCACCCCAGACAAATTAACAAGTAAAGATGCCTATCGAAGAAATGGGATCTTAGCAAAAGCTTTAAATTCTCGCATTAGAAGTGAAAGTTTGAAGAGGAAATTTCTTTGCACTTCTTTGAGATCACGAAGAATGGATGAAAATTTTGATGCCACTAGTAAAAGGGAATGCAGTATATGTCTGTGTGATTTACACCTGTCTGCCGTAAGTTGTTCATGTTCAGATGACAAGTTTGCATGTCTTGATCATGGAAAACAGCTTTGTTCATGCACTTGGAACAATAAAGTTCTCCTCTACCGATATGAAATCAGTGAATTGGAAGTTCTTTGTCAAGCTTTGGATGGAAAGCTAAGTGCAGTCTATAAATGGGCCAAAGAGTATCTTGGATTAACTTTACCTTCATCTTCCATTGCCTCCAAAAGAAAACAAACCCCAGAAAATGCAAATGGTTCAGCTTGCCCTTCAGAAGGCTTGAAGATGAAAGAACCTATATCCCAGACAGTATCAAAATGGAAAGAACGTAAATTGCAGGCAATATCAAATGCATCAGGTAAGAAACAAATTGAAGTGCCCTCCCAAGTCACAGGGACTATTCATTCAAAAAAGAAGACAACTTTACTTAAGTCAAAACTACCAGATGAGATGAAAGCAAAAAAGAAAATGGTGGGAAGGATTAATTCTGCTGGCATCAAGACTGATATGAAGGCACTTAGGAATAAATTTACAATTTCAAAGAAAGTAGCAGACCCAAAACCGAAAGTATCAACAGTTTCCTCAATTGCAAACTCACGTTACATTTCTTTTCTACAAGAAAGCATGTTACCTGAAGTTTTATCTGACAGTACGAGCACATCTTCGTCTTCAGAATCTGATGGCTCATAA 2538 0.3936 MMEADYGSNCSKFEKMENLTIPPGFASLTSFILEKSKKVKKTKKSTTFPTASGQEPICMKTKPEMNDTTAYNRPWIIFDQSNHKPEESQMERLHMDVPLNSCRPKGTIHGCPNCSDCLKVTARWRPEDARREVLEEVPIFHPTEEEFKDTLKYIASIRSKAEPHGICRIVPPTCWKPPCFLEKKNFWENSKFAAQIQRIDGHQVQHAAEIMASSHENTETKRRGAKVTLDSQIVNRSTSTTNNQNVEDFDSGSEPGPKFSLKTFKKFADEFKIQYFNYKGKDKDKIIGSDINLTRRQQQWEPSVENIEGEYGRIAQNPTEEIEVLCGNALDAGDFGSGFPTVSDPLEAYTWPEYLKSGWNLNNILSCSGSLLSFESSEASHHFVPRIHVGMCFSPLNWKVEEHQLYSLCYMHLGEPRVWYSVPGTFVVDFETIWKKYLPDMNAGQPNMCDNLVMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSEAVSFAPVEWLLHGQNVVEIYSEQRRKTLISYDKFLLGAAREAVRAQWETDLCMKSTPDKLTSKDAYRRNGILAKALNSRIRSESLKRKFLCTSLRSRRMDENFDATSKRECSICLCDLHLSAVSCSCSDDKFACLDHGKQLCSCTWNNKVLLYRYEISELEVLCQALDGKLSAVYKWAKEYLGLTLPSSSIASKRKQTPENANGSACPSEGLKMKEPISQTVSKWKERKLQAISNASGKKQIEVPSQVTGTIHSKKKTTLLKSKLPDEMKAKKKMVGRINSAGIKTDMKALRNKFTISKKVADPKPKVSTVSSIANSRYISFLQESMLPEVLSDSTSTSSSSESDGS. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04391 845 PANTHER LYSINE-SPECIFIC DEMETHYLASE 131 768 - -
Seca2g04391 845 SMART cupin_9 353 519 IPR003347 -
Seca2g04391 845 Pfam C5HC2 zinc finger 609 659 IPR004198 -
Seca2g04391 845 Pfam JmjC domain, hydroxylase 388 502 IPR003347 -
Seca2g04391 845 ProSiteProfiles JmjC domain profile. 353 519 IPR003347 -
Seca2g04391 845 Pfam jmjN domain 138 171 IPR003349 -
Seca2g04391 845 MobiDBLite consensus disorder prediction 236 250 - -
Seca2g04391 845 Gene3D Cupin 122 503 - -
Seca2g04391 845 SMART JmjN_1 136 177 IPR003349 -
Seca2g04391 845 MobiDBLite consensus disorder prediction 236 255 - -
Seca2g04391 845 ProSiteProfiles JmjN domain profile. 137 178 IPR003349 -
Seca2g04391 845 SUPERFAMILY Clavaminate synthase-like 256 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04391 Seca-Chr2 129011693 129018130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04391 10 721 JUMONJI Transcription Factor Family AT1G08620 44.856 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca2g04391 JmjC 2.8e-30 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04391 K11446 - gmx:100804864 1156.35