Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04388 ATGGATAGTGTATCTCATTCTGGCCAAGAAAATGGAAGTTCCTCTCCTTTAGAAAATGAAGTTATTGCAACAGATTTAGCTTCATATGTTGGAATGGAATTTGAGACTGAAGAACATGCATACAGGTATTATAATATGTATGCTGGCTTTGTTGGTTTTAGTATTAGAAAAGAATGGGTCAACAAGAGCAAGATGGATAAGAAGATAGTGTTATCTCGAAAATATTGTTGTTTTAAAGAAGGCTTTAAGAAGCAAACTAATTCTCAAGGAAAAAAGATTCGAAAAGATGTTCGAAATTGGTGTCTAGCTCAAATGGTCATTGCACGCCAACCTAATGAAAAATTTGTTGTTACATATTTTGAGAGTCAACATACTCATGTACTTGCAACGCCTCGTAGTAGACACAAGTTACCATCACAACGGAAGATATCTATCGCTCAAGAAGCTCAAATTGAGCTAGCAAATCATTCTGACGCAAAAATGGTTGTGGATTATGTTTATTTTGGAGATGTGTTATGTTTTGATACTACTTATCGTACTAACAAGAACTTTCGACCATTTGCACCCTTCCTTGGATTCAACCACCATCGAGAAACAGTGATATTTGGGGCTGCATTATTATATGATGAAACTGCAGATCCATTTGAATGGTTGTTTAAAACTTTTCTGAAGGCTATGTGTGGAAAGAAGTCAAAAACAATTTTTACTGATCAAGATGCAGCAATGGAAAAAGCTATTCCAAACATTTTTCCTGTGTCATATCATCGTATTTGTTTGTGGCATTTATTTCAAAATGCCTTGAAGAATATGAATTATGCTTTTAGGCAATCAAATACTTTTGCAGCTGAATTGAAGAATTGTATTTATGATCATGAATACGAGGATGACTTCCTAAATGCATGGGAATTATTGCTTGATAAGCATAACCTTCACCAAAATAAATGGATGAGTGATTTATTTGAGAAGAGAAAAAAATGGGCAATGGTGTATGGGCGTCATTCATTTTCAGCAGGGGCTACAACAACACAACTGGGTGAAAGTTTTAATGGTCGTCTACAAGGTTACATGAAGTCAACATTCAATGTGCTAGAATTTTTCAGGAACTTTGATAGACTTTTGGAGGACTTGCGGTATAAAGAGCTAGAATCAAACTATGATATGAACCAAAGATTGCCATCATTGAATGTAGATATCCTTTTGCTAACTACTGCAAGAGATATCTATACACCTACAATGTTCTAA 1242 0.3486 MDSVSHSGQENGSSSPLENEVIATDLASYVGMEFETEEHAYRYYNMYAGFVGFSIRKEWVNKSKMDKKIVLSRKYCCFKEGFKKQTNSQGKKIRKDVRNWCLAQMVIARQPNEKFVVTYFESQHTHVLATPRSRHKLPSQRKISIAQEAQIELANHSDAKMVVDYVYFGDVLCFDTTYRTNKNFRPFAPFLGFNHHRETVIFGAALLYDETADPFEWLFKTFLKAMCGKKSKTIFTDQDAAMEKAIPNIFPVSYHRICLWHLFQNALKNMNYAFRQSNTFAAELKNCIYDHEYEDDFLNAWELLLDKHNLHQNKWMSDLFEKRKKWAMVYGRHSFSAGATTTQLGESFNGRLQGYMKSTFNVLEFFRNFDRLLEDLRYKELESNYDMNQRLPSLNVDILLLTTARDIYTPTMF. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04388 413 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 413 IPR031052 GO:0006355
Seca2g04388 413 Pfam FAR1 DNA-binding domain 42 129 IPR004330 -
Seca2g04388 413 Pfam MULE transposase domain 171 265 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04388 Seca-Chr2 128963995 128965473 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g04388 MULE 1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04388 - K17604 lja:Lj0g3v0135969.1 444.121