Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04379 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAAAGGGCCATGGACTCCAGAAGAAGATCAAATCCTCATCAATTACATCAACACCTATGGTCATGCCAATTGGCGTGCTCTGCCCAAACATGCTGGGCTGCTAAGGTGTGGAAAGAGTTGCAGACTACGGTGGACAAATTATCTGAGACCGGACATCAAACGGGGCAACATTACCAGAGAAGAAGAGGATGAAATAATCAAGTTGCATGAAATGTTGGGAAACAGATGGTCAGCTATAGCAGCAAAGTTACCGGGGCGAACAGATAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAAAGGCTGCCACAACACCAACAACAGAACAATGACCCAAAACGAAATAAAAAACAAGCCAATATGTTAGATGTGGACGCTTTCTCCAAATCCAAATCCAAATCCAACCAAGATGTTAAACAACAAGAGCAAGAAGTGGATGGGCCACAATCTCCTCCACAGTGTTCTAGTGACATCTCCTCCCTCACCACTAGTGACAATGATAATAATAGCATTAATGCTACTACTAATCAAGACATTAAGTTCATAGATAACAATAATAATAACGATAATATTGATGTTGATTCGCCAGAGAATAATCTTGCATTGGATGAGGATTTCTGGTTGGAAGTGTTGTCATCTGATAATTCCAGTGATGACACAAGCAGTTTTGCCACCATTGGTGCTGATTATCAATTTCAATTGCCAATATTCTCTCCAATAGGGACTGAAGAAGGGGTCCTTAGTGGTAGTTCATCAAGTACTAGTATGTGTGATGGCATGGATTTTTGGTTCGATGTTTACGCGAGAGCTGAGGAAATAACAGAGGTATTGGAATTGTAA 882 0.4172 MGRAPCCEKMGLKKGPWTPEEDQILINYINTYGHANWRALPKHAGLLRCGKSCRLRWTNYLRPDIKRGNITREEEDEIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLPQHQQQNNDPKRNKKQANMLDVDAFSKSKSKSNQDVKQQEQEVDGPQSPPQCSSDISSLTTSDNDNNSINATTNQDIKFIDNNNNNDNIDVDSPENNLALDEDFWLEVLSSDNSSDDTSSFATIGADYQFQLPIFSPIGTEEGVLSGSSSSTSMCDGMDFWFDVYARAEEITEVLEL. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04379 293 Gene3D - 70 140 - -
Seca2g04379 293 CDD SANT 16 61 IPR001005 -
Seca2g04379 293 MobiDBLite consensus disorder prediction 141 186 - -
Seca2g04379 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Seca2g04379 293 FunFam Transcription factor MYB15 68 140 - -
Seca2g04379 293 Gene3D - 11 67 - -
Seca2g04379 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca2g04379 293 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca2g04379 293 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Seca2g04379 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca2g04379 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca2g04379 293 SMART sant 13 63 IPR001005 -
Seca2g04379 293 SMART sant 66 114 IPR001005 -
Seca2g04379 293 CDD SANT 71 112 IPR001005 -
Seca2g04379 293 FunFam MYB-related transcription factor 13 66 - -
Seca2g04379 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca2g04379 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca2g04379 293 MobiDBLite consensus disorder prediction 155 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04379 Seca-Chr2 128828845 128830893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04379 1 293 MYB Transcription Factor Family AT2G31180 47.855 9.05e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g04379 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04379 K09422 - gmx:100775603 370.548