Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04373 ATGGATTTTGAATCTTCTTTTTTCCAAAACCAAAACCTTCACTTCTTCCCTGAAGAAAATTCACACCCTTTTTCTTGGGACAATGACTTCAATTTTTTCAATGACGACACCATCTTTCCCTTCAATAACTTCATCGACAACTCACAATCACAAACCAATGAATTATCATCATCACCCTCTGAATCAAACTCTTCAGGATCTCTAGCTAGTGTTGAGTCACAAGAAGTCTCTTCCAATTCAGCTTATCCTATTGCATCTCCCCCTTCACCACCAAAGGAAAATAGTAAGAGGGTGTTCAGAGGAGTGAGGAGAAGGCCATGGGGGAAATTTGCAGCAGAGATAAGGGATTCAACAAGAAATGGGGTTAGAGTGTGGATTGGAACATTTGATACAGCTGAAGCAGCAGCTTTGGCTTATGACCAAGCAGCTTTCACTACAAGGGGTTCATTGGCAGTGCTGAATTTTCCAGAGGAAGTGGTAAGAGAGTCCCTTAAAGATATGGCTAATAAGCCTTGGGAAGAGGGTACTTCCCCTGTGTTGGCACTCAAGAGAAAGCATAGCATGAGGAGTAAGCCTAGTAAAAAGAAAACCAAAAAGGCTCAAAGTGATCACCATCAGATCATAGAGATTAACACTTGCCAAAATGTGTTGGTGTTGGAGGATTTGGGTGAAGAGTATCTAGAGCAACTTTTGAGCTTGACTTCCTAA 708 0.4153 MDFESSFFQNQNLHFFPEENSHPFSWDNDFNFFNDDTIFPFNNFIDNSQSQTNELSSSPSESNSSGSLASVESQEVSSNSAYPIASPPSPPKENSKRVFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFTTRGSLAVLNFPEEVVRESLKDMANKPWEEGTSPVLALKRKHSMRSKPSKKKTKKAQSDHHQIIEINTCQNVLVLEDLGEEYLEQLLSLTS. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04373 235 SMART rav1_2 98 162 IPR001471 GO:0003700|GO:0006355
Seca2g04373 235 ProSiteProfiles AP2/ERF domain profile. 98 156 IPR001471 GO:0003700|GO:0006355
Seca2g04373 235 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Seca2g04373 235 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Seca2g04373 235 FunFam Ethylene-responsive transcription factor 2 97 157 - -
Seca2g04373 235 MobiDBLite consensus disorder prediction 185 204 - -
Seca2g04373 235 MobiDBLite consensus disorder prediction 185 201 - -
Seca2g04373 235 MobiDBLite consensus disorder prediction 50 100 - -
Seca2g04373 235 SUPERFAMILY DNA-binding domain 98 157 IPR016177 GO:0003677
Seca2g04373 235 Pfam AP2 domain 98 148 IPR001471 GO:0003700|GO:0006355
Seca2g04373 235 Gene3D AP2/ERF domain 98 158 IPR036955 GO:0003700|GO:0006355
Seca2g04373 235 MobiDBLite consensus disorder prediction 50 83 - -
Seca2g04373 235 PANTHER DNA-BINDING DOMAIN 59 231 IPR044808 GO:0003700|GO:0009873
Seca2g04373 235 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04373 Seca-Chr2 128696213 128696920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04373 83 231 AP2-EREBP Transcription Factor Family AT3G23240 61.074 1.70e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g04373 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04373 K14516 - gmx:100779524 246.899