Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04372 ATGGAGGGAGAGAGACATGGAAACTCAGAGGTTCGATACAGAGGGATTCGTAGAAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCAACAAGAAAAGGTGCTCGCATTTGGCTCGGAACCTTTGAAACCGCGGAGCAGGCTGCACGTGCTTATGATGCTGCTGCTTTTCACTTTCGTGGTCACAGAGCCATTCTCAACTTCCCAAATGAGTATGTTCATTCTCTTAATCCAAACTCTTCAACTATTTCATTGCCTTTACCTCCTCCTCCTCCTTCCATTTCCTTAAATCAACAAGAGGATGATGATATTTTTGAGTTATCATATTTGGACAAGAAGTTGTTGGAAGAACTCCTTCAAGCGCCAGATGCTACAGGAAGATATAGCTAA 393 0.4427 MEGERHGNSEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFETAEQAARAYDAAAFHFRGHRAILNFPNEYVHSLNPNSSTISLPLPPPPPSISLNQQEDDDIFELSYLDKKLLEELLQAPDATGRYS. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04372 130 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Seca2g04372 130 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
Seca2g04372 130 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Seca2g04372 130 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Seca2g04372 130 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Seca2g04372 130 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Seca2g04372 130 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Seca2g04372 130 PANTHER DNA-BINDING DOMAIN 8 81 IPR044808 GO:0003700|GO:0009873
Seca2g04372 130 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Seca2g04372 130 FunFam Ethylene-responsive transcription factor 2 11 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04372 Seca-Chr2 128672678 128673070 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04372 8 122 AP2-EREBP Transcription Factor Family AT3G23230 57.500 7.10e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g04372 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04372 - - gmx:100500462 147.517