Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04371 ATGGATTTTGATTCTTCTCTTTTGTGGTACCAAAGTCAAGAATCCTCTTCAAATTATTCATGGGAAAAGTTGTTTTTGTTGAACAACATTCCCTTCGATTTGGTGAAGGTGGAATCGTCCTTGGACTCCAAATCTTCATCCTATATTGAAGAAAAAGATTCACCACCACAACAACCACTAGCACTACCAATTGGTACTACAAATTCACAATCCGTATTACCAAAATCCAAACGAGAGAAGAGGCAGTACAGAGGAGTAAGGAGAAGGCCATGGGGGAAATTCGCGGCAGAGATAAGGGACACAACAAGAAATGGGGTTCGAGTTTGGATTGGGACATTTGATACAGCTGAAGCAGCTGCTTTGGCTTATGACCAAGCAGCTTTCTTGACGCGGGGGTTTGGGGCTACCCTTAATTTCTCAGAGCAAGTGGTGATAGAGTCCCTTAAGGACATTGGTTTTAGGACATTGAATAATCATGGTTGCTCACCTTTGTTGGAACTGAAAAGGATGCATCTCATGAGATCAAAATCTATATCTAAGGCTGCAGGTATTGGGAGTAATAAAAAGGTCAAAAGGGGAACTTGCAGCAGCGGTAGTACTGAGTTGGGCCGTGCTCAAAATGTGCTGGTGTTGGAGGATTTGGGGCCTGAATATCTAGAGCAACTTTTGAGCTCCACTTTCCCCTGCATAGCGTGA 696 0.4339 MDFDSSLLWYQSQESSSNYSWEKLFLLNNIPFDLVKVESSLDSKSSSYIEEKDSPPQQPLALPIGTTNSQSVLPKSKREKRQYRGVRRRPWGKFAAEIRDTTRNGVRVWIGTFDTAEAAALAYDQAAFLTRGFGATLNFSEQVVIESLKDIGFRTLNNHGCSPLLELKRMHLMRSKSISKAAGIGSNKKVKRGTCSSGSTELGRAQNVLVLEDLGPEYLEQLLSSTFPCIA. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04371 231 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700|GO:0006355
Seca2g04371 231 MobiDBLite consensus disorder prediction 47 84 - -
Seca2g04371 231 FunFam Ethylene-responsive transcription factor 2 81 141 - -
Seca2g04371 231 PANTHER DNA-BINDING DOMAIN 54 223 IPR044808 GO:0003700|GO:0009873
Seca2g04371 231 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Seca2g04371 231 Pfam AP2 domain 82 128 IPR001471 GO:0003700|GO:0006355
Seca2g04371 231 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Seca2g04371 231 CDD AP2 82 142 IPR001471 GO:0003700|GO:0006355
Seca2g04371 231 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Seca2g04371 231 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Seca2g04371 231 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04371 Seca-Chr2 128659716 128660411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04371 76 226 AP2-EREBP Transcription Factor Family AT3G23240 54.305 2.30e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g04371 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04371 K14516 - gmx:100818907 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04371 2 128659716 128660411 Seca8g04318 8 123166200 123166832 ECH
Seca2g04371 2 128659716 128660411 Seca8g05910 8 152078675 152079340 ECH
Seca2g04371 2 128659716 128660411 Seca2g04371 2 128659716 128660411 ECH
Seca8g05638 8 148107576 148108256 Seca2g04371 2 128659716 128660411 PCT