Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04369 ATGGAAAAGGACTTGAAGGATAAGGTCAAAGAAGGGGAAAGAAAGCAAGTCAAATACAGAGGAGTGCGGTGCAGGCCTTGGGGAAAATTTGCTGCAGAGATTCGGGATTCAGCTAGGCATGGAGCTAGAGTGTGGCTTGGGACTTTTAACACTGCAGAAGAGGCTGCAAGAGCTTATGATCGTGCTGCTTTTCAAATGAGAGGTGCTTTGGCTATTCTCAACTTTCCACATGAACATCTTCCATGCAATGTGGCTTCTCCTCTTACCAAGTCATCTTCTTCTTCTTATTCCTCATCTTCATCGGTTAATACTGAGAAACAGGTTTTTGAATTTGAGTATTTGGATGACAAATTGTTAGAGGAACTCCTCAATTGTGATGAGAATGTATACCATCAGGAAAAACTTGCTTAA 411 0.4185 MEKDLKDKVKEGERKQVKYRGVRCRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFQMRGALAILNFPHEHLPCNVASPLTKSSSSSYSSSSSVNTEKQVFEFEYLDDKLLEELLNCDENVYHQEKLA. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04369 136 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Seca2g04369 136 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Seca2g04369 136 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Seca2g04369 136 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Seca2g04369 136 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca2g04369 136 PANTHER DNA-BINDING DOMAIN 12 126 IPR044808 GO:0003700|GO:0009873
Seca2g04369 136 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Seca2g04369 136 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Seca2g04369 136 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Seca2g04369 136 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04369 Seca-Chr2 128621637 128622047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04369 15 127 AP2-EREBP Transcription Factor Family AT3G23230 65.289 2.00e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g04369 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04369 - - gmx:100800069 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04369 2 128621637 128622047 Seca2g04369 2 128621637 128622047 ECH
Seca2g04369 2 128621637 128622047 Seca8g05651 8 148251114 148251536 PCT