Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04368 ATGTTAAAAGTTCTACCTAATTGCAGCCATGCCTTTCACTTGGATTGCATTGACATTTGGCTTCAAACAAATGCAAATTGCCCTCTTTGTAGATCAAGCATTTCAGGCAACACAAGCTGTCCAATGGACCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTACTCTCTAACATGGGAAATGATGAAGATTTTGTGGTCATTGAATTGGGGAGAGAAAATGGGGGAACATTGCCTCAGATTCAGAGAGAAAGAATTGACTCAAGGGAAAGCAGTAGAAGTCACTCAACAAGGAAGATGGAGCAGAAGTTGGTGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGTGATGAGTGTATTGATGTTAGAAAGAAAGATGATCAGTTTTCTATTCAGCCTATAAGAAGATCTTTCTCAATGGATTCTGCAAATGATAGACAAGTTTACTTAGATGCTCAAGCTATAATACAACAGAATAGACATCACAATGAGGCTAGTGCTAGTGAAGATTGTAATAGCAGAGGTCGAAGATCATTTTTTCCATTTTGTTATGGACTGGGATCAAAAAATGCACTCCTTCCTCTAGAGAATGGAGTATAA 615 0.3919 MLKVLPNCSHAFHLDCIDIWLQTNANCPLCRSSISGNTSCPMDHIIAPSSSPQDSQLLSNMGNDEDFVVIELGRENGGTLPQIQRERIDSRESSRSHSTRKMEQKLVHLKPRKCHHVSIMGDECIDVRKKDDQFSIQPIRRSFSMDSANDRQVYLDAQAIIQQNRHHNEASASEDCNSRGRRSFFPFCYGLGSKNALLPLENGV. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04368 204 MobiDBLite consensus disorder prediction 79 103 - -
Seca2g04368 204 PANTHER RING-H2 FINGER PROTEIN ATL16 1 200 IPR044600 GO:0016567|GO:0016740
Seca2g04368 204 Pfam RING-H2 zinc finger domain 4 31 IPR024766 GO:0008270
Seca2g04368 204 SUPERFAMILY RING/U-box 3 37 - -
Seca2g04368 204 MobiDBLite consensus disorder prediction 85 103 - -
Seca2g04368 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 35 IPR013083 -
Seca2g04368 204 ProSiteProfiles Zinc finger RING-type profile. 8 31 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04368 Seca-Chr2 128610310 128611998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04368 2 166 C3H Transcription Factor Family AT1G04360 47.090 1.79e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04368 K19041 - gmx:100809883 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04368 2 128610310 128611998 Seca2g04368 2 128610310 128611998 ECH
Seca2g04368 2 128610310 128611998 Seca8g05655 8 148291133 148292173 PCT