Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04359 ATGGGTACCAACTTGCACCAAGTACTCAGAAGCCTCTGTTTCAATACTAATTGGAACTACGCCATCTTTTGGAAGCTCAAACATCGTGCTCGAATGATCTTGACATGGGAGGACGCTTACTATGACAATCCTGATTATTATGACTCTTCAGAAAATAAGTACTGTGAGAAGACCTTGGAACAGTTTGGTGGTGGGAGATTTTCACATGACGCTCTAGGGTTAGCCGTGGCAAAGATGTCATATCATGCATACTCATTAGGGGAAGGTATTGTTGGACAGGTAGCTGTTACTGGAAAGCATCGGTGGATCTGTGCAGATAATCAAGTTACAGGTCCTGGTTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATTAGGACAATTGTTGTTGTAGCTGTAGTCCCCCTTGGTGTTGTTCAGCTTGGCTCTCTAAATAAAGTGATTGAAGATATGGGGTTTGTAAATCATATAAGAAATCTATTTTTGTCTACTCAAGATTACTCAATAGGCCATGTTCCTAGTCAAATACAGAGTACTTTGAAGAATTCTTCATCTCAACCAGATGTATTGAAGGAAAATATGTCTTCAGATATTATGCCTGCTTGTTTACATGATACAGAGAAAATCATGAAGAGTGAAACAGTAGATGTTTTAATGCCCCTTCAATGTTCTGGGAGGAACCATGCACCTCATTCTGCTTATGGGAAAATGGCTGGTAATGTGGCCAAACATGAAGGGCCTGAATTTTATAGTGATGAAAGCTCCATTTTGCTTCAGTCAATATCCAATATGATGAATGTGGAGCATCAGGAATTCGACGAGAAGAGACCTCTAAATGGGAGGAAGTGTGAAGGGGGCAGTAGTGGCTGCAAAAATAGGAGTTTGGAATCGGAAAAAAATGTCTCATCATATTTAAACAATTTTCTTGTGGATAATTCTAGCTTCAGTGATTTAATATGCCCATCAGAAAATGTCAGAGTTGATTCTGCATGCTTTCCTTCAGTTTTTCTTGATGCAGTTGTTCATGAAAGTGGTAAGTTGCATTATGCGGATACTAACCAAAAAGGAATGTTGAATATTGCTAGACCTTCAGATGATAACTCTGAAAAACATACCAGAAAGTCAGAGTTTCAGACTGAGGCTTGTGATAAGGATACCTCGTACTTTCAAACTGAACCTTGTTACAAGGATAGCTCATACTCATTGTTGAAGTTCCCTGCTGGCTGTGAACTACATGAAGCACTTGGACCATCTTTTTTGAAAGGGAGTAAGTATTTTGATTGGCTAGCACAGGTTAATCAAGATATGAAAACTGTGGATATGTCAGATGAGATTAGTACTAGTCAATTGACTTCTGCATTGACTTCTGAACCTCATCCAGAACATCTTTTGGAAGCGATGGTGGCTAACATTTGCCACAGTAATAATGATGTTAATAGTGAATTATCATTTTGTACATCAATGCAATCTGCAATGACTTCTGTAAAAAATCCTGAAACTTCTATCCACAATGTGCATACTATTAATTCAGAAGGATATTCAACAGATCAGCCTTCTCTTGTCAGAGAGGACAAACACCATTGTTTGAGTTCATCATCAGGGATATGTGGTGTGATGTCCTCTAAAGGTGTTTCTTCTACATGTCCTAGTTCATATAGTGAACAGTTTGAAAGGTCTTCTGAACCGTCTAAAAACAGCAAGAAGAGGGCTAGGCCTGGGGAAAGTTGTAGGCCTCGGCCAAGAGACAGGCAACTGATCCAAGATCGTATTAAGGAGTTGAGAGAGCTGGTGCCAAACGGAGCAAAGTGCAGCATTGATTCACTACTGGAGCGCGCAATAAAGCACATGCTCTTTCTCCAAGGCATAACTAAGCATGCAGACAAGCTAACAAAATTTGCTGATACTACATCAAAGTTGCATCACATGGAAACAGACATTCTTGGATCCTCTGAGCAGGGTTCAAGTTGGGCAATGGAGGTAGGGGGTCATCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAGGCCATAAGAAGCTTGGGCCTTACAATTTTGAAGGGTGCAACAAAAGTGCATGATGAGAAGATATGGTTATGCTTTGTTGTTGAGGGTCAAAACAACAGAAATGTACACAGATTGGATATCTTGTGGCCGCTTGTTCAGATTCTGCAATCCAAGAGCACATTGAACCAATAA 2277 0.4027 MGTNLHQVLRSLCFNTNWNYAIFWKLKHRARMILTWEDAYYDNPDYYDSSENKYCEKTLEQFGGGRFSHDALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVTGPGLSFEFADGWQSQFSAGIRTIVVVAVVPLGVVQLGSLNKVIEDMGFVNHIRNLFLSTQDYSIGHVPSQIQSTLKNSSSQPDVLKENMSSDIMPACLHDTEKIMKSETVDVLMPLQCSGRNHAPHSAYGKMAGNVAKHEGPEFYSDESSILLQSISNMMNVEHQEFDEKRPLNGRKCEGGSSGCKNRSLESEKNVSSYLNNFLVDNSSFSDLICPSENVRVDSACFPSVFLDAVVHESGKLHYADTNQKGMLNIARPSDDNSEKHTRKSEFQTEACDKDTSYFQTEPCYKDSSYSLLKFPAGCELHEALGPSFLKGSKYFDWLAQVNQDMKTVDMSDEISTSQLTSALTSEPHPEHLLEAMVANICHSNNDVNSELSFCTSMQSAMTSVKNPETSIHNVHTINSEGYSTDQPSLVREDKHHCLSSSSGICGVMSSKGVSSTCPSSYSEQFERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQGITKHADKLTKFADTTSKLHHMETDILGSSEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGATKVHDEKIWLCFVVEGQNNRNVHRLDILWPLVQILQSKSTLNQ. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04359 758 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 755 IPR043561 GO:0003700|GO:0006355
Seca2g04359 758 MobiDBLite consensus disorder prediction 554 587 - -
Seca2g04359 758 MobiDBLite consensus disorder prediction 565 587 - -
Seca2g04359 758 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 575 624 IPR011598 GO:0046983
Seca2g04359 758 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
Seca2g04359 758 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 588 630 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04359 Seca-Chr2 128464862 128475066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04359 1 754 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 41.101 5.65e-169 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04359 - - ccaj:109796613 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04359 2 128464862 128475066 Seca2g04359 2 128464862 128475066 ECH
Seca8g05665 8 148377176 148383322 Seca2g04359 2 128464862 128475066 PCT