Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04357 ATGACTGGTTCTGGTTCTCCCTGTGGAGCCTGCAAATTCTTGAGAAGGAAATGTGTCAGGGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAGGGTTCCACCCATTTTGCTGCCATTCATAAGGTCTTTGGTGCAAGTAATGTCTCAAAGCTCCTTGCTCATCTCCCTGTTACTGACCGTTGTGAAGCTGCTGTCACTATTTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGTTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGTGGTCAATTTACAAGCACAGCTAGCTTATCTCAGGGAACAAGCAGCTCAGAGTTGTTTCAATGTTTCAGCAATTGAAAACCCTAATGAGAAATGCTTTGGAAAACCTACTACTTTCCCCCAAGATCTTCAAAGTTGGTTCCAGATGGAAAATTCCAACATGGGTCAACAATTTCTTCCAAATTTTTCAACTTGTCCCTCAACAACACAATTTTATGGGAATAGTACTACTAGCCTCATGGACCCAAACCCTATTGGAAATTATGAGAATTCAGGAACCTTGGAAGAAAGCATCTCATTTTCTAGCTTTGATGAGAGTTGTAATTATAACTCCATCTCCTTTGACATGCAAAGGCAGTGGGCCTTTCATGAAGTGGACAACCTTCCGTAG 669 0.4155 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGSTHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAYLREQAAQSCFNVSAIENPNEKCFGKPTTFPQDLQSWFQMENSNMGQQFLPNFSTCPSTTQFYGNSTTSLMDPNPIGNYENSGTLEESISFSSFDESCNYNSISFDMQRQWAFHEVDNLP. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04357 222 Coils Coil 87 107 - -
Seca2g04357 222 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Seca2g04357 222 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Seca2g04357 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04357 Seca-Chr2 128423415 128424255 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04357 7 207 AS2 family AT3G58190 53.991 1.62e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca2g04357 LOB 8.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04357 K13945 K13944 gmx:100816960 357.836