Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04355 ATGGCTTCTGCAACTGGCACTGGAACTGGTTCTGGTTCTGGTTCTCCTTGTGGGGCATGCAAATTCCTCAGAAGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCTGAACAAGGCCCTGCTAGATTTGCAGCCATCCATAAAGTGTTTGGTGCCAGCAATGTTTCCAAATTGCTTTTACATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACTATTGCTTATGAGGCTCAAGCTCGTATCAGAGACCCTGTTTATGGCTGTGTCTCCCACATTTTTGCCTTACAACAACAGGTAGTGGCATGCTTGCAGGCACAATTGATGCAAGTGAAAGCTCAGCTGGCACAGAACATGATGGAATCAAGGAACATAGAGAATCAGTGGCCAGGGAATAATGTTAGTGGACAACCAATGAATCCATTTTGTCCAACTTACATGAATCCTATATCTCCTCAGAGTTCTCTTGAGTCAATTGATCATAGCAGCATGAATGATGGAATAATGGGAATGCAAGATATACAAAGCAGAGGGGATTTCTCATTCCAAGCTTGTTCTAAGAAAAGATCATATAACATTAATAACAATAATAATGACTTGGGTGAGCTGCAAGAATTGGCACTGAGGATGATGAGGAACTGA 651 0.4255 MASATGTGTGSGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVVACLQAQLMQVKAQLAQNMMESRNIENQWPGNNVSGQPMNPFCPTYMNPISPQSSLESIDHSSMNDGIMGMQDIQSRGDFSFQACSKKRSYNINNNNNDLGELQELALRMMRN. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04355 216 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 204 - -
Seca2g04355 216 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Seca2g04355 216 ProSiteProfiles LOB domain profile. 15 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04355 Seca-Chr2 128402260 128403769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04355 3 216 AS2 family AT2G42430 55.378 5.10e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca2g04355 LOB 4.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04355 K13944 - gmx:100801508 348.591