Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04351 ATGGACTTAATAAGGTACCCATCAGAATTAGAGTACTCCAAGAGCTCCTCCAGTGATCGATCATCATCAGAACAGGTGCAGAACAATGATAATGAGACAGGAAGTGGCAGATCCTATGAGTGCATCTTTTGCAAGAGAGGCTTCACTACTGCACAAGCTTTAGGTGGACACATGAACATTCACAGAAAAGACAAATCCAACAAGTCCTCCAAACCCACCACTTTTCCCCTTTCAACTTCAATCAACAACAACTATGCAGCAGATCTAGGGTTCTATTCTGAAATTCCAAGCCATGATCCTTCGGAAGGGAATAAAGTTTATCTTCCTTCAACCACTTGTGGTATCAGACCTAATTCTCATGTACAGTATAGTGAGGAAAATCAAGAGGATCACATGTTTGGACAAGATTGGAGGCACAGAAATTTGAGTTTCTACACTAATAATCCTTTTTGCGATGGTGAAATTAAAGACAAGTTTGAAGATAATAATGAAGAGGATGGCTTGGATTTGGAGCTGAGGCTGGGTCCTCATCCATAG 537 0.4097 MDLIRYPSELEYSKSSSSDRSSSEQVQNNDNETGSGRSYECIFCKRGFTTAQALGGHMNIHRKDKSNKSSKPTTFPLSTSINNNYAADLGFYSEIPSHDPSEGNKVYLPSTTCGIRPNSHVQYSEENQEDHMFGQDWRHRNLSFYTNNPFCDGEIKDKFEDNNEEDGLDLELRLGPHP. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04351 178 MobiDBLite consensus disorder prediction 10 34 - -
Seca2g04351 178 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Seca2g04351 178 Pfam C2H2-type zinc finger 39 63 - -
Seca2g04351 178 MobiDBLite consensus disorder prediction 156 178 - -
Seca2g04351 178 PANTHER OS07G0101800 PROTEIN 17 177 - -
Seca2g04351 178 MobiDBLite consensus disorder prediction 1 34 - -
Seca2g04351 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Seca2g04351 178 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Seca2g04351 178 Gene3D Classic Zinc Finger 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04351 Seca-Chr2 128352443 128352979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04351 39 112 C2H2 Transcription Factor Family AT5G43540 46.753 5.91e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04351 - - gmx:102670484 159.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04351 2 128352443 128352979 Seca2g04351 2 128352443 128352979 ECH
Seca8g05680 8 148525913 148526470 Seca2g04351 2 128352443 128352979 PCT