Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04350 ATGGAAGGAAACTATCTGACCAGAAACACACATAAAGGGGAGAGCTTTGGGTTTCATGAGGAGCACACATGGGGAACATCATGGCCTGCAAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAATCTGCTCAGGCTCTTGGTGGTCACATGAATGTTCATAGAAGGGATAGGGCAAGATTGAGATCATCCTCCTTATCCTCATGGGTTTCTCATGATTCTTCTCCTAAACCTAACCCTACCTTTATTATTGCTAATGCTAATAACCCAACAACTACTACTCATCTAATTTCATCACCCTCCTCACCACCACCACCACCATCATACCTATCTGATGCACTTTTGAATTGTACACACCGTTCTCCACTTTATTGTCCTTGTCTCACTTTATCTTCTTCAGTACTGTCCTCAACTACTACTAACAGTGCTGGAGATAAGAAACCAAGACTCACATCTTCACATCTTCCTCCTTTGAGTCCTCAAATCAGGGAAATTAAGATGAGTGCTTTAGAGGGTTGTGCAATGGGGGATCATGATCAAGAACACAATAAGGTCTTCAAGAATAATAATGAGCACAACATCACTTTGGAGTTGGGAATAGGATTGCTTAAACAACCAAAGGAGAAGTTAGATTTGGAGCTAAGATTGGGGCAATTCTAG 663 0.4148 MEGNYLTRNTHKGESFGFHEEHTWGTSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSSLSSWVSHDSSPKPNPTFIIANANNPTTTTHLISSPSSPPPPPSYLSDALLNCTHRSPLYCPCLTLSSSVLSSTTTNSAGDKKPRLTSSHLPPLSPQIREIKMSALEGCAMGDHDQEHNKVFKNNNEHNITLELGIGLLKQPKEKLDLELRLGQF. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04350 220 PANTHER OS07G0101800 PROTEIN 16 219 - -
Seca2g04350 220 SMART c2h2final6 33 55 IPR013087 -
Seca2g04350 220 Pfam C2H2-type zinc finger 33 57 - -
Seca2g04350 220 MobiDBLite consensus disorder prediction 139 158 - -
Seca2g04350 220 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Seca2g04350 220 Gene3D Classic Zinc Finger 17 78 - -
Seca2g04350 220 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Seca2g04350 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04350 Seca-Chr2 128337021 128338368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04350 28 218 C2H2 Transcription Factor Family AT2G42410 36.364 1.57e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g04350 zf-C2H2_6 7.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04350 - - gmx:102660985 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04350 2 128337021 128338368 Seca2g04350 2 128337021 128338368 ECH
Seca8g05681 8 148551432 148552745 Seca2g04350 2 128337021 128338368 PCT