Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04341 ATGACGGCTGAGAGATTTTGTGAAAACGAAGAAGACAAGGCTATGTTTGAATCTCTATTGGGTACAGAAGCTGTTGTCTTCTTTAGTTCGGCGGTTTCCAATGATGTCTTTTCCGACGTTATGGTTCCACCTGGCCCTGATATGGGTATTCACCAGCGGTTATGCCACCTTGTTGAGGTGTCCAAGTGGGACTATGCCATTTTGTGGCAGGTTGCTGGCTTGAAATCTGGTGGCTATGTCTTGAAATGGGGTGATGGGCACTGTCAGGATTCCAAAGGGGTTCAGAGGAGTGAGCTTGAGGAGAAGGAGGATGATGTCAAGAGGCAGGTGTTGCAGAAGCTTCATGCTTGCTGTGGTGGATCTGACTCAAAAGAGGCTATTCATACAAGGTTGGATAGGATCTCTGATGTGCAAATGTTTTACTTGACCTCAATGTATTATGTAATTGGTTTTAATTCACAGTGTGGCCCTGGCAGTTCTTTTAAGTGTGGTAAATCAGTTTGGGTTTCTGACACTGCTAGTTGTTTAAACCAATTTGAATCAAGATCATTTCTGGGGAAATTGGCTGGTTTTCAAACAGTTGTTTTTGTGCCTCTCAAGGGTGGGGTTGTTGAGCTTGGTTCAAAGGAAATGATTCCTGAAGAGCAGGGTGTTTTGGATATGGTCAGAACAACATTTTGGGAATCTAGCTCTGGACAGGCAAAGGTGTTACCTAAGATTTTTGGGCATGAGTTAAGCCTTGGGGATTCAAAATCTCAGTCCATAACTATTAGTTTCTCTCCGAAAGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTATGAAGTACAAGCGCTAGGGGCAAATCATGCTTATGGAAATTCTTCCAATGGGTGCATAGGTGACAGTAATGAGGCAAAAATGTTCCCTCAGTTAAATCAAATGATTCCTGGGAATTTTAATCCTCAAGCAAGGGTTTCTTGTATAGATTTGGGTAATGAAGACTCATCCTCACCTCATCCGGATGAGCGGAAGCCTAGAAAAAGAGGGAGAAAGCCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGGCAAAGGCGAGAGAAGCTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCTAATATATCTAAAATGGACAAGGCATCTCTGCTTGGTGATGCTATTACCCATATCACTGATCTCCAGAAGAAGATCAAGATGTTGGAAGCTGAAAAGGACATGGGTAACAATAAGGACCAGCAGTTGCCATTGCCGGATATCGATTTTCAGCCTCGACAGGATGATGCAGTTGTGAGAGTGAGCTGCCCCTTGGATATTCACCCAGTTTCTGGAATTGTTAGAATGTTAAGAGAGCATCAAATTGTAGCTCAAGAGTCCAGTGTTTCAACTGCACAAGATAAGGTAATTCATACTTTCTCCATAAAAACTCAAGGTGGGGAGGCTACTGCTCTACAATTGAAAGAAAAGCTTGAAGCATCTCTATCCAAAAATTGA 1512 0.4292 MTAERFCENEEDKAMFESLLGTEAVVFFSSAVSNDVFSDVMVPPGPDMGIHQRLCHLVEVSKWDYAILWQVAGLKSGGYVLKWGDGHCQDSKGVQRSELEEKEDDVKRQVLQKLHACCGGSDSKEAIHTRLDRISDVQMFYLTSMYYVIGFNSQCGPGSSFKCGKSVWVSDTASCLNQFESRSFLGKLAGFQTVVFVPLKGGVVELGSKEMIPEEQGVLDMVRTTFWESSSGQAKVLPKIFGHELSLGDSKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNGCIGDSNEAKMFPQLNQMIPGNFNPQARVSCIDLGNEDSSSPHPDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKMLEAEKDMGNNKDQQLPLPDIDFQPRQDDAVVRVSCPLDIHPVSGIVRMLREHQIVAQESSVSTAQDKVIHTFSIKTQGGEATALQLKEKLEASLSKN. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04341 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Seca2g04341 503 Coils Coil 390 417 - -
Seca2g04341 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Seca2g04341 503 Coils Coil 489 503 - -
Seca2g04341 503 MobiDBLite consensus disorder prediction 322 362 - -
Seca2g04341 503 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Seca2g04341 503 PANTHER MYC 41 499 IPR045084 GO:0003700|GO:0006355
Seca2g04341 503 FunFam Transcription factor bHLH13 344 418 - -
Seca2g04341 503 SMART finulus 357 406 IPR011598 GO:0046983
Seca2g04341 503 Gene3D - 344 416 IPR036638 GO:0046983
Seca2g04341 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 421 IPR036638 GO:0046983
Seca2g04341 503 CDD bHLH_AtAIB_like 348 421 - -
Seca2g04341 503 MobiDBLite consensus disorder prediction 329 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04341 Seca-Chr2 128227777 128230392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04341 3 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.024 5.10e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g04341 bHLH-MYC_N 8.3e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04341 - - gmx:100819968 763.837