Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04334 ATGGCAACAGAAGAAGTCGCAGTGACTGTGCCCATCGAAGAAGTGGTGCCGGAGCAGGTGGAGACCGACGTCAACCCACCGGCGGAGGAAGAGAAGAATGAGTCCGACAAGCCCGATCCCAAGCCCAAAAAGGCAGGCAAGGAGCCCAAACCTAAGAAGTCCTCTGCTCCTAAGGCCCGGACCACTCCAACTCATCCTTCTTACGAAGTGATGATCAAGGATGCAATTGTGACACTCAAGGAGAAGAACGGTTCAAGCCAGTATGCAATTGCCAAGTTCCTTGAGGAGAAGCATAAGCAGCTCCCTTCCAACTTCAGGAAGCTCTTGTTGTACCATTCCAAGAAGCTTGTTGCTGCTGGAAGGCTCGTCAAGGTCAAGAGTTCCTTCAAGCTTCCACCGGTGAAGTCTTCCGCTCCCAAGCCTGCTGCTGCGAAGAAGAAACCTGCAGCAGCTGCTAAGCCCAAGCCCAAGCCCAAGTCAAAGCCCAAGTCTCAGCCCAAGCCTAAGGCCAGCAAGACAACCAAGACGACTAAGTCAACAGCAACTAAGTCACCTGCCAAGGCGAAGCCAGCTGCCAAGCCCAAGCCGAAGCCAAAGGCAAAGCCTGCTGCCAAGCCCAAGGCTGCTGCCAAGCCCAAGGCTGCTGCTAAGCCCAAGGCTACCAAGGCTGCTCCTGCTAAGGCTAAGTCAACGGCTGCCGCAAAGCCTAAGGCTGCTGCGAAGCCAAAAGCCGCGACCAAGGCTAAGCCGAAGCCCAAGGAGAGACCAGCCAAGGCTTCGAGGACGTCAACTAGAACATCCCCGGGGAAGAAAGCCCCTGCTCCGAAACCGGCGGCGAAGAAGGCTGCACCGGCGAAGAAAGCTCCGGCGAAAAGTGCGAAGCCCAAGAGTGTAAAGTCGCCGGCAAAGAAGGCTGTGGCGAAGAGGGGAAGGAAGTGA 939 0.5612 MATEEVAVTVPIEEVVPEQVETDVNPPAEEEKNESDKPDPKPKKAGKEPKPKKSSAPKARTTPTHPSYEVMIKDAIVTLKEKNGSSQYAIAKFLEEKHKQLPSNFRKLLLYHSKKLVAAGRLVKVKSSFKLPPVKSSAPKPAAAKKKPAAAAKPKPKPKSKPKSQPKPKASKTTKTTKSTATKSPAKAKPAAKPKPKPKAKPAAKPKAAAKPKAAAKPKATKAAPAKAKSTAAAKPKAAAKPKAATKAKPKPKERPAKASRTSTRTSPGKKAPAPKPAAKKAAPAKKAPAKSAKPKSVKSPAKKAVAKRGRK. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04334 312 MobiDBLite consensus disorder prediction 1 69 - -
Seca2g04334 312 MobiDBLite consensus disorder prediction 190 206 - -
Seca2g04334 312 MobiDBLite consensus disorder prediction 297 312 - -
Seca2g04334 312 SUPERFAMILY "Winged helix" DNA-binding domain 62 145 IPR036390 -
Seca2g04334 312 Gene3D - 60 138 IPR036388 -
Seca2g04334 312 MobiDBLite consensus disorder prediction 124 312 - -
Seca2g04334 312 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 64 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca2g04334 312 MobiDBLite consensus disorder prediction 25 55 - -
Seca2g04334 312 FunFam Histone H1 59 144 - -
Seca2g04334 312 PRINTS Histone H5 signature 78 95 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca2g04334 312 PRINTS Histone H5 signature 157 171 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca2g04334 312 PRINTS Histone H5 signature 211 230 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca2g04334 312 PRINTS Histone H5 signature 51 72 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca2g04334 312 PRINTS Histone H5 signature 189 206 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca2g04334 312 PANTHER HISTONE H1 35 291 - -
Seca2g04334 312 CDD H15 62 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca2g04334 312 MobiDBLite consensus disorder prediction 150 168 - -
Seca2g04334 312 Pfam linker histone H1 and H5 family 65 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca2g04334 312 SMART h15plus2 62 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca2g04334 312 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04334 Seca-Chr2 128167835 128168964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04334 66 141 Single Myb Histone (SMH) Gene Family AT1G72740 34.177 3.71e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04334 K11275 - cpap:110814810 135.961