Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04332 ATGCCTGTTGACGCCCTTCCTTCTCCCCCGCCGACCAAATCCTTTCCCCATTTCAGAGGCGTCCGTAAGCGTCCTTGGGGCCGCTTCGCCGCCGAGATCCGCGATCCTTGGAAAAAGACCCGCAAGTGGCTCGGCACCTTCGACACCGCCGAGGAAGCTGCCAGGGCCTACGACAACGCCGCCATGAGCCTCCGCGGCCCCAAGGCAAAGACCAACTTCTCCTACGACGCTGCCCCCGATGCCTCCGGCAACGTGTTTAGGAGGCAGCAGGTGGAGTTTTGGAACCCGCCGGTTTACTTCGCCGCCGCCGGAGCGCCAGTGAGGTCGGAGTACAAGGGCTACAAGTTGGAAAACATTGTGGTGAACAAAGAGGCGGAGAAGATACAGACGAAAGAGAAGACGAACAAGAAGCCGTTCTTGTTCGACCTTAACCAGCCGGCGCCGCTCCTCTGA 453 0.6026 MPVDALPSPPPTKSFPHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDNAAMSLRGPKAKTNFSYDAAPDASGNVFRRQQVEFWNPPVYFAAAGAPVRSEYKGYKLENIVVNKEAEKIQTKEKTNKKPFLFDLNQPAPLL. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04332 150 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Seca2g04332 150 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Seca2g04332 150 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Seca2g04332 150 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Seca2g04332 150 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Seca2g04332 150 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 105 - -
Seca2g04332 150 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Seca2g04332 150 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Seca2g04332 150 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Seca2g04332 150 CDD AP2 16 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04332 Seca-Chr2 128123438 128123890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04332 18 85 AP2-EREBP Transcription Factor Family AT1G50640 76.471 2.03e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g04332 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04332 K09286 - gmx:100816599 186.037