Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04331 ATGGAGGAGGTTGAAGAAGCTAACAGAGCAGCTGTTGAGAGCTGTCATAGAGTTATAAGCATGTTGTCTCAGCCCCAGGATCATGTTCAGTATAGGAATTTGATGGTGGAAACTGATGAGGCTGTAGTGAGGTTCAAGAAAGTTGTTTCCCTGCTCAATAATGGTTTAGGTCATGCAAGAGTCAGGAAGCTCAAAAAACTTCATATCCCTTTTACACAAAGTATCCTCTTGGACAACCCAAATTGCAAAACCAATCATCAACCAAAAAATCTGCAGTTTCTTCAAGCTAGTTTTCCTGATAATTCAGTTCAGGAATTGGGTTCAAGCGTCAGAAATTCACTCTGTCTAGGAAACCCATCTTTGGAAATGAGCTCCAGTGGGAAAAGTTCTCTTCACCTTACCCCACAAACCTCATCCACACACTATCACATCCTTCAGCAGCAACAGCAACAACAAAGATTACTGTTGCAACAGCAACAATTGAAACATCAAGCAGAAATGATGTTCCGGAGGAACAATAGTGTCATAAGTCTGAATTTTGATACCTCTAGCTGCACACCATCAATGTCATCTACTAGGTCTTTCGTTTCTTCCTTGAGCATAGATGGAAGCGTAGCTAACTTGGATGGAAGTGCCTTCCATTTAGTAGGAGCTGCACACTCCTCTGATCATAATTCACAACAGCACAAGAGAAAATGTTCTGCCAGAGGTGATGAGGGTAGCGTGAAATGTGGGAGCAGTTCTAGATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAAAGATCAATTAAGGTTCCTGCTATCAGCAACAAGCTTGCAGATATCCCTCCGGATGATTATTCATGGAGAAAGTACGGCCAGAAGCCAATCAAGGGGTCACCTCACCCTAGGTATGTTCAAGCTCTTGCTTTCTGGGGATACTATAAGTGCAGCAGTGTGAGAGGCTGCCCAGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCCATGCTAATTGTTACCTATGAAGGCGACCACAACCACCCCAAATTACCAACACAATCTGCAAATGCATGA 1062 0.4341 MEEVEEANRAAVESCHRVISMLSQPQDHVQYRNLMVETDEAVVRFKKVVSLLNNGLGHARVRKLKKLHIPFTQSILLDNPNCKTNHQPKNLQFLQASFPDNSVQELGSSVRNSLCLGNPSLEMSSSGKSSLHLTPQTSSTHYHILQQQQQQQRLLLQQQQLKHQAEMMFRRNNSVISLNFDTSSCTPSMSSTRSFVSSLSIDGSVANLDGSAFHLVGAAHSSDHNSQQHKRKCSARGDEGSVKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRYVQALAFWGYYKCSSVRGCPARKHVERCLEEPSMLIVTYEGDHNHPKLPTQSANA. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04331 353 Pfam Plant zinc cluster domain 230 275 IPR018872 -
Seca2g04331 353 Pfam WRKY DNA -binding domain 279 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04331 353 SMART WRKY_cls 277 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04331 353 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 351 IPR044810 GO:0003700
Seca2g04331 353 SUPERFAMILY WRKY DNA-binding domain 275 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g04331 353 Gene3D WRKY domain 262 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g04331 353 MobiDBLite consensus disorder prediction 125 145 - -
Seca2g04331 353 ProSiteProfiles WRKY domain profile. 272 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04331 353 FunFam WRKY transcription factor 65 261 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04331 Seca-Chr2 128103165 128105017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04331 1 350 WRKY Transcription Factor Family AT2G30590 54.103 3.76e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g04331 WRKY 1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04331 - - jre:109020122 518.464