Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04329 ATGTCGAATCAGGTGGTGAGAGTAAGAAGGGACACGATTACAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGTATTTATGATAAAATTACAGATGAGGAATTGGAATGCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTTGAGAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTGAAGGGAAGAAAGGTCAAGGCACCTGAAGTTGTCACCTCATTACCATTACCAGCTAGAAGAAAGGAGAGATCTCTTTCATATTTGGTGGTCAGCACACCAAGGGTATCTGCACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAGCCCGTTAAAAAAGAGGAAGACTTACTAGAAGATCATCCTGAGAGTTCAAGCTCACCTGACACTTCAAACAAGTTTGCTCAGAATTCTGGACAGGTAAGTTTGTCCCCTTGTGAGGGTAGTCAATCCATACCTAATAAAGAAACAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTTGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAAGGGTCTGATGCTAAACTAGAACGCGTTCAAGTAAATGAGAGTGACTCTCAAGTGCCGAAAACCAAAAATAAGGAAAATAAACGTAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCTTATCCTGTCTCTTCAGATACAGCAAAACCCAATAAATTGCGAAGAATACGCAGGAAAAAGGAGCCTGCTCTTGGAGAATCAGGCATATCACCCCAAGCTGTGCTGGATTCTGCCAGCAATAAACACTTCAGGACTGGTCCAATTTGGTTCTCCTTAGTTGCTTCTGAAAACCAGGAAGGAGATGCGCCCTTGCCCCAAATTCCTACAAGTTATGTGAGAATAAAGGATGGAAGCGTACCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTAGATCTGACCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGCAGCTACATAATTTAGTTGAGTTGTGGCTGGATACAACAGCATCCACATCACAGAGAATTCCAGCAACAATTGGTTCCTCAGCAAAGGATTTTGTCATGGTCCTGGCTTATGCTCGGAAGGTTCCACACACTTGA 1293 0.4269 MSNQVVRVRRDTITACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSLPLPARRKERSLSYLVVSTPRVSAQATMTGRRTKPTRKASGLRSSSFSIEKPVKKEEDLLEDHPESSSSPDTSNKFAQNSGQVSLSPCEGSQSIPNKETENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSSVQGSDAKLERVQVNESDSQVPKTKNKENKRKAKVEDEKISPYPVSSDTAKPNKLRRIRRKKEPALGESGISPQAVLDSASNKHFRTGPIWFSLVASENQEGDAPLPQIPTSYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLQLHNLVELWLDTTASTSQRIPATIGSSAKDFVMVLAYARKVPHT. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04329 430 MobiDBLite consensus disorder prediction 230 251 - -
Seca2g04329 430 MobiDBLite consensus disorder prediction 230 283 - -
Seca2g04329 430 MobiDBLite consensus disorder prediction 252 272 - -
Seca2g04329 430 SUPERFAMILY RING/U-box 13 83 - -
Seca2g04329 430 SMART ring_2 19 59 IPR001841 -
Seca2g04329 430 MobiDBLite consensus disorder prediction 124 147 - -
Seca2g04329 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Seca2g04329 430 MobiDBLite consensus disorder prediction 149 165 - -
Seca2g04329 430 MobiDBLite consensus disorder prediction 124 202 - -
Seca2g04329 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 106 IPR013083 -
Seca2g04329 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 426 IPR044807 GO:0004842
Seca2g04329 430 MobiDBLite consensus disorder prediction 166 199 - -
Seca2g04329 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Seca2g04329 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Seca2g04329 430 CDD RING-HC_PCGF 17 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04329 Seca-Chr2 128065473 128072373 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04329 2 348 C3H Transcription Factor Family AT2G30580 54.023 4.89e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04329 K16277 - gmx:100815540 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04329 2 128065473 128072373 Seca2g04329 2 128065473 128072373 ECH
Seca2g04329 2 128065473 128072373 Seca2g04326 2 127963780 127970569 PCT