Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04326 ATGTCGAATCAGGTGGTGAGAGTAAGAAGGGACACGATTACAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGTATTTATGATAAAATTACAGATGAGGAATTGGAATGCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTTGAGAAACTAAGGTTACAGACCTTGATTTCTGATTACCAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTCCCCCTTGAAGTTGTCACCTCATTACCATTGCCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTTGTCAGCACACCAAGGGTATCTGCACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAGCCCGTTAAAAAAGAGGAAGACTTACTAGAAGATCATCCTGAGAGTTCAAGCTCACCTGACACTTCAAACAAGTTTGCTCAGAATTCTGGACAGAGTTTGTCCCCTTGTGAGGGTAGTCAATCCATACCTGATAAAGAAACAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTTTGGAAAACTTTGAACTGTAGAGGTTGCAATGTGCAAGGGTCTGATGCTAAACTAGAATCCATTCAAGTAAATGAGTGTGACTCTCAAGTGCCGGAAACCAAAAATAAGGAAAATAAACGTAAGGCAAAAGTTGAGGATGAAAAGATTAGTCCTTATCCTCTCTCTTCGGATGCAGCAAAACCCAATAAATTGCGAAGAATACGCAGGAAAAAGGAGCCTGCTCTTGGAGAATCAGGCATATCACCCCAAGATGTGCTGGATTCTGCCAGCAATAAACACTTCAGGACTGGTCCAATTTGGTTCTCCTTAGTTGCTTCTGAAAACCAGGAAGGAGATGCGCCCTTGCCCCAAATTCCTACAAGTTATGTAAGAATAAAGGATGGAAGTGTACCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTAGATCTGACCAGTGAAACAGAGCTACATAATTTAGTTGAGTTGTGGCTGGATACAACAGCATCCACATCACAGAGAATTCCAGCAACAATTGGTTCCTCAGCAAAGGATTTTGTCATGGTCCTGGCTTATGCTCGGAAGGTTCCACACACTTGA 1218 0.4253 MSNQVVRVRRDTITACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRLQTLISDYQARPQFARCKGQSFPLEVVTSLPLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKASGLRSSSFSIEKPVKKEEDLLEDHPESSSSPDTSNKFAQNSGQSLSPCEGSQSIPDKETENGAEPWDAKLDLWKTLNCRGCNVQGSDAKLESIQVNECDSQVPETKNKENKRKAKVEDEKISPYPLSSDAAKPNKLRRIRRKKEPALGESGISPQDVLDSASNKHFRTGPIWFSLVASENQEGDAPLPQIPTSYVRIKDGSVPVSFIQKYLMKKLDLTSETELHNLVELWLDTTASTSQRIPATIGSSAKDFVMVLAYARKVPHT. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04326 405 SUPERFAMILY RING/U-box 13 65 - -
Seca2g04326 405 MobiDBLite consensus disorder prediction 150 166 - -
Seca2g04326 405 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Seca2g04326 405 MobiDBLite consensus disorder prediction 238 272 - -
Seca2g04326 405 SMART ring_2 19 59 IPR001841 -
Seca2g04326 405 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Seca2g04326 405 MobiDBLite consensus disorder prediction 124 202 - -
Seca2g04326 405 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 401 IPR044807 GO:0004842
Seca2g04326 405 MobiDBLite consensus disorder prediction 242 262 - -
Seca2g04326 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 94 IPR013083 -
Seca2g04326 405 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Seca2g04326 405 CDD RING-HC_PCGF 17 60 - -
Seca2g04326 405 MobiDBLite consensus disorder prediction 167 198 - -
Seca2g04326 405 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04326 Seca-Chr2 127963780 127970569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04326 2 338 C3H Transcription Factor Family AT2G30580 50.147 2.20e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04326 K16277 - gmx:100815540 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04329 2 128065473 128072373 Seca2g04326 2 127963780 127970569 PCT