Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04320 ATGGAAGTTGGCCTGAAGAAGAATATGGTGTATGAGGAAACTGAGCTGAGGCTTGGATTGCCTGGAAATGGAGCCACATCCACTGAAGAAGTGGTAATAAGGAAGAGAGGTTTCTCTGAGACTCAGACTCAGACTGAGACAACCACAGTGGATTTGATGCTTAATCTCTCCTCTAACAAAAAGGAAGCTACTTCTGGGGAGGCAGATCCAACTGATCATAAGCCTAAGGAGATCAAGACCCTTTTGCCTGCAGATCCTGCTAAGCCTCCTGCCAAGGCGCAAGTGGTGGGTTGGCCACCAGTGCGGTCGTTCCGGAAGAACATGTTGGCTGTGCAAAAGAGCGTTGGAGAAGAGAGTGAGAAGAATAGCAATGGAAGCTTTGTGAAAGTGAGCATGGATGGAGCTCCTTACCTTCGTAAAGTGGACTTGAACATGTATAAGTGTTACCAAGACCTTTCTGATTCCTTAGCCAAAATGTTCAGCTCCTTCACCATTGGTAATTGTGAATCTCAAGGAATGAAGGATTTCATGAATGAGAGTAAGCTGATGGATCTTTTGAACAGCTCTGAGTATGTCCCAACCTATGAAGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTGCGTATCATGAAAGGAAAGGAGGCTATTGGTCTTGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 732 0.4617 MEVGLKKNMVYEETELRLGLPGNGATSTEEVVIRKRGFSETQTQTETTTVDLMLNLSSNKKEATSGEADPTDHKPKEIKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESEKNSNGSFVKVSMDGAPYLRKVDLNMYKCYQDLSDSLAKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04320 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 230 IPR003311 GO:0005634|GO:0006355
Seca2g04320 243 MobiDBLite consensus disorder prediction 65 81 - -
Seca2g04320 243 SUPERFAMILY CAD & PB1 domains 121 224 - -
Seca2g04320 243 Gene3D - 119 237 - -
Seca2g04320 243 FunFam Auxin-responsive protein 120 235 - -
Seca2g04320 243 MobiDBLite consensus disorder prediction 60 95 - -
Seca2g04320 243 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Seca2g04320 243 Pfam AUX/IAA family 13 234 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04320 Seca-Chr2 127866794 127870756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04320 114 228 B3 DNA Binding Superfamily AT3G61830 31.304 6.97e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca2g04320 AUX_IAA 2.4e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04320 K14484 - gmx:100810013 369.777