Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04318 ATGGCCAATAACCCTTCAGAGGCTCCCGCCGCCGACGACTTCCTCGAACAAATCCTCGGCCTTCCCAACTTCGCTTCCGCCGACTCTGGCTTGGGCGGACACGATGTCGGCTTGGCGGGAACAGGTTCTCCGGCTCCTCCGATGATGCTACAGCTCAACTCCGCCGATGCCAACCCCCACCTCGCCGGCGGTGCCTCCTTTCATGCGCCCGTCTACCAGTTAGGGTTAAGCTTGGACCAAGGCAAAGGAGTAGGTTTCTTGAAACCCGAAGAGGCATCAGGTAGTGGAAAACGCTTCCGCGACGACGTTGTTGATGGTAGGCCTAAGAATGTTTTTCATGGACAACCCATGCTTACTACTATTCCTACTGCTCCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGGTTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCATTGCAGGAACTGGTTCCAAGTGTCAACAAGACAGACAGAGCTGCCATGTTAGATGAAATTGTGGATTACGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGTATGAGTAGATTGGGCGGAGCAGGTGCAGTAGCACCACTGGTAACTGACATCCCATTATCATCAGTGGAGGAAGAAGGCAGTGAAGGTGCAAGAAACCGACCAGCTTGGGATAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAACTGATGGAAGAAAATGTTGGGGCTGCTATGCAATTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCATTGGCATCTGCAATATACCAATCACAACCACCGGATAGCTCTAGTATAGTCAAGCCTGAAACTAATCCTCCTTCATAG 891 0.5084 MANNPSEAPAADDFLEQILGLPNFASADSGLGGHDVGLAGTGSPAPPMMLQLNSADANPHLAGGASFHAPVYQLGLSLDQGKGVGFLKPEEASGSGKRFRDDVVDGRPKNVFHGQPMLTTIPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPS. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04318 296 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 93 275 - -
Seca2g04318 296 MobiDBLite consensus disorder prediction 93 108 - -
Seca2g04318 296 MobiDBLite consensus disorder prediction 87 144 - -
Seca2g04318 296 FunFam Basic helix-loop-helix transcription factor 135 197 - -
Seca2g04318 296 Pfam Helix-loop-helix DNA-binding domain 145 189 IPR011598 GO:0046983
Seca2g04318 296 SMART finulus 146 195 IPR011598 GO:0046983
Seca2g04318 296 Gene3D - 135 197 IPR036638 GO:0046983
Seca2g04318 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Seca2g04318 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04318 Seca-Chr2 127837444 127842782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04318 67 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.851 4.64e-121 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g04318 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04318 - - gmx:100797789 491.886