Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04313 ATGGAGACGCACGGCGGAGGAGGACCCCTTCGTTCCCGTAGCTCCCAATCTCCTTCTCCTTCACACTCTGCCTCCGCTTCCGCCACATCTTCCATCCACAAACGCAAGATGGCGTGTGACGACCACGCGCCTCCCTTCCCCCCTTCTTCCTTCTCCGCTGACACCCGCGACGGTGCCCTTACCTCCAATGACGACCTCGAGAGTATCTCCGCCCGCGGTGCCGACTCCGACTCCGACGAAGACTCCGAGGACGCCGTCGTCGACGACGACGAAGACGACTACGACTACGACAACGATTCCTCCATGCGCACCTTCACCACCGCCAGGCTCAACAACCCTCCCTCCGCTCCTCGCAACACCAAGCTCAAGACTGATAATAACTCTACCGTCAAGATCGAGAATTCCGACGCCGCCAAAGACGCCGGACCCACCGCCACCGGTGCCGCTGCCACCGCGGGCTCCGTCCCCGGCATTGTGGTTAAGGAGGACGCAACTAAGATTTTTACTGATAATTTACAAACAAGCGGAGCTTACAGCGCCAGGGAAGAGAGTCTGAAGAAAGAGGAGGAAGCAGGAAAGCTCAGATTTGAATGCCTTTCGAATGATGGTGTTGATGAGCACATGGTTTGGTTGATAGGACTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGCAATCATGTTGTTGGAGGCATTACATATCGTCCATATGTGAGCCAGAAGTTTGGTGAAATAGCCTTTTGTGCAATTACGGCTGATGAGCAAGTTAAAGGTTATGGTACCAGATTGATGAATCACTTAAAACAGTATGCACGGGATATAGATGGGCTGACACATTTTCTCACATATGCTGACAACAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGACAAGGAGCGATGGCAAGGTTATATAAAGGATTATGATGGGGGAATTCTCATGGAATGCAAAATTGATCCAAAGCTCCCTTACACTGATTTGTCAACCATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAGATCAGAGAGCTGTCAAACTGTCATATTGTTTATCCTGGAATTGATTTTCAGAAGAAAGAAGCTGGCATTCCTAAAAAAATTGTTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAACTTTGAGTGGTTCTACTGACAATGCTACAAATCAAAAACATTTGACTGTGTTTATGCGTTCACTTCTGAAGTCAATGCACGATCATGCTGATGCATGGCCATTCAAGGAACCAGTTGATGCAAGGGATGTTCCTGATTATTATGACATCATCAAAGATCCTATGGATTTGAAGACAATGACTAAGCGGGTGGAGTCAGAACAATATTATGTCACATTTGAGATGTTTGTTGCGGATGTCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCAGAAACAATTTATTACAAATGTGCTACAAGGCTTGAAGCCCACTTTCAAAGCAAAGTGACAGCAGGCCTGCAGTCAGGTTCCAAAATTCAGTAG 1632 0.4712 METHGGGGPLRSRSSQSPSPSHSASASATSSIHKRKMACDDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDEDSEDAVVDDDEDDYDYDNDSSMRTFTTARLNNPPSAPRNTKLKTDNNSTVKIENSDAAKDAGPTATGAAATAGSVPGIVVKEDATKIFTDNLQTSGAYSAREESLKKEEEAGKLRFECLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDIDGLTHFLTYADNNAVGYFIKQGFTKEIHLDKERWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKIVDDIPGLREAGWTPDQWGHSRFRTLSGSTDNATNQKHLTVFMRSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMTKRVESEQYYVTFEMFVADVRRMFANARTYNSPETIYYKCATRLEAHFQSKVTAGLQSGSKIQ. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04313 543 PANTHER GH11602P 77 540 IPR037800 GO:0004402
Seca2g04313 543 Pfam Acetyltransferase (GNAT) family 241 319 IPR000182 GO:0016747
Seca2g04313 543 Gene3D - 420 539 IPR036427 GO:0005515
Seca2g04313 543 CDD NAT_SF 241 295 - -
Seca2g04313 543 PRINTS Bromodomain signature 450 463 IPR001487 GO:0005515
Seca2g04313 543 PRINTS Bromodomain signature 464 480 IPR001487 GO:0005515
Seca2g04313 543 PRINTS Bromodomain signature 499 518 IPR001487 GO:0005515
Seca2g04313 543 ProSiteProfiles Bromodomain profile. 447 518 IPR001487 GO:0005515
Seca2g04313 543 CDD Bromo_gcn5_like 435 534 - -
Seca2g04313 543 SMART bromo_6 428 537 IPR001487 GO:0005515
Seca2g04313 543 FunFam Histone acetyltransferase KAT2A 191 355 - -
Seca2g04313 543 MobiDBLite consensus disorder prediction 9 32 - -
Seca2g04313 543 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 194 348 IPR000182 GO:0016747
Seca2g04313 543 ProSitePatterns Bromodomain signature. 452 510 IPR018359 -
Seca2g04313 543 MobiDBLite consensus disorder prediction 100 134 - -
Seca2g04313 543 Pfam Bromodomain 440 522 IPR001487 GO:0005515
Seca2g04313 543 MobiDBLite consensus disorder prediction 77 97 - -
Seca2g04313 543 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 203 353 IPR016181 -
Seca2g04313 543 MobiDBLite consensus disorder prediction 54 69 - -
Seca2g04313 543 MobiDBLite consensus disorder prediction 1 151 - -
Seca2g04313 543 Gene3D - 190 354 - -
Seca2g04313 543 SUPERFAMILY Bromodomain 418 532 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04313 Seca-Chr2 127761496 127779874 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca2g04313 Bromodomain 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04313 K06062 - gmx:100813942 902.123