Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04303 ATGGCTAACAGTGGTCCTAACACAAATGGATCTCAGTTTTTTATTACATTCAAGCGCCAGCCTCATCTTGATGGGAAACATGTAGTTTTTGGAAAAGTTGCCCAGGGAATAGAGATTCTGAAGAAAATTGAGCAGGTGGGAACATCAGACGGGAAACCTACCCAGCCAGTTAAAATTATTGATTGTGGTGAAATCTCTAAAGCAAAAATTCAGCATACAGTTGAGAAAGAGAAAGAGAAAGAGAAAGGGAAAAAGAAAAAGTCAGGGAAATCCTTAACTTCTGATGATAGTTCTGACAAAAAATCAAGGGGAAAAAGAAAAAAATCTTCCAAAGACAGGAGGAAGAGGAGGAGATACTCAACATCTGATAGTGATAGCAGTAGTGATAGCTATTCTTCAGATTCTGAATCGGATTCTTCATACTCTGATTCAAGTTCCTCTAGTTATCGGAAACACCAGAAGAGGAAGAGAAATAAACGCAAGCATGGGAAGAAGAGGAGTATTGGACGAAAGCAAAGGAGAAGCCAGCACAGTAAAAGTAGAAGATCAAGACACAAGTCCAGAAGGAGTTCTGAGGATTCAAGTGATACAGAAAGCGAGAGTTCTAGTGCTAGTGGCAGTAGTTCTGGTGATGAGAAAGCTGACCGTCGTGTCTCTGGTCGTAAAACAAATACTGATAATAAAGATCAAAGAAGTCTAGACACAGAAAAGCAATCTTCTAGTCTTCCCCTACAAAGTCAAACTATTCCAGAACAAGAGATGGATCCCAAGGTTAGAAGAACTGTAGACAAGCAATCTCATGAAGAAGGTGAATTGTCTCCAGAAAATGGTGCACTTCTGAATAACGGGCATGACACTCAAGCCGAATTTAGTAAACCTGCTAAGCAACATACGTATTCAGATGATTCAAATCACAATAGGGGTGCAAGTCCTGGAAGAAGTCCTGCTAGAAGTCCTACCAGGAATTCTGGAGAGCTAAACCAAGGACGTGCTTTATTGGCTAGTCCTGGCCGAAAAACATCTGAACCTGCTGCCTCCAAACATGGTCAGGGCTTTTCAAAAAGCCCTTCACCAAATGGCATGCCTAAGCGTGTTAAAAAAGGACGTGGCTTTACTGAGCGATATGCCTTTGTACGAAGATATCGCACTCCATCTCCAGAGCGGTCTCCCCGTACATATCGTTATGGCGATAGAAATATAAGAAGGAACTTTGATAGAAATACAAGCTACAGAAGTTATTCTGAGCGCTCACCACCAAGACGTTTTCGAAGCCCACCAAGGGGCAGGAGCCGTCCAAGATACCAAAGCAGAAGAAGCCGGAGTAGGAGCATCTCCCGCAGTCCAGTGCGTGGCCGTTTAAGAGACCGTGACCGTAGCCGGAGTCCGAAGCGCAGTCTTAGTCCAGAAGACAGGCGGCCTCCCATAAGTGACAGATTAAAATCCCGACTTGGACCTCGAAGTGATCAACAATCTCCAGACAGGAGGAGGTCAAAGTCCAATTCTAGGAGCAATGGCTCTTCTCGCTCCAGATCCCCTGACGCTACACCACCAAGGCGTTATGATAAAAGGACTTCAGTATCTCGTAGCAGGTCTAGATCGAGCTCTTCATCCGGACAAAAGGGTTTAGTCTCTTATGGAGATGCTAGTCCTGATTCTGGGGCAAGGTAG 1668 0.4424 MANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVAQGIEILKKIEQVGTSDGKPTQPVKIIDCGEISKAKIQHTVEKEKEKEKGKKKKSGKSLTSDDSSDKKSRGKRKKSSKDRRKRRRYSTSDSDSSSDSYSSDSESDSSYSDSSSSSYRKHQKRKRNKRKHGKKRSIGRKQRRSQHSKSRRSRHKSRRSSEDSSDTESESSSASGSSSGDEKADRRVSGRKTNTDNKDQRSLDTEKQSSSLPLQSQTIPEQEMDPKVRRTVDKQSHEEGELSPENGALLNNGHDTQAEFSKPAKQHTYSDDSNHNRGASPGRSPARSPTRNSGELNQGRALLASPGRKTSEPAASKHGQGFSKSPSPNGMPKRVKKGRGFTERYAFVRRYRTPSPERSPRTYRYGDRNIRRNFDRNTSYRSYSERSPPRRFRSPPRGRSRPRYQSRRSRSRSISRSPVRGRLRDRDRSRSPKRSLSPEDRRPPISDRLKSRLGPRSDQQSPDRRRSKSNSRSNGSSRSRSPDATPPRRYDKRTSVSRSRSRSSSSSGQKGLVSYGDASPDSGAR. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04303 555 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 63 IPR002130 GO:0000413|GO:0003755
Seca2g04303 555 MobiDBLite consensus disorder prediction 150 186 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 253 271 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 366 409 - -
Seca2g04303 555 SUPERFAMILY Cyclophilin-like 1 65 IPR029000 -
Seca2g04303 555 MobiDBLite consensus disorder prediction 303 329 - -
Seca2g04303 555 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 64 IPR002130 GO:0000413|GO:0003755
Seca2g04303 555 MobiDBLite consensus disorder prediction 279 294 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 124 147 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 514 528 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 236 252 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 70 103 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 210 235 - -
Seca2g04303 555 Gene3D - 1 70 IPR029000 -
Seca2g04303 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Seca2g04303 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 12 24 IPR002130 GO:0000413|GO:0003755
Seca2g04303 555 MobiDBLite consensus disorder prediction 70 555 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 423 447 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 529 543 - -
Seca2g04303 555 MobiDBLite consensus disorder prediction 448 500 - -
Seca2g04303 555 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04303 Seca-Chr2 127635614 127639769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04303 1 61 U-box Gene Family AT5G67530 48.387 2.76e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04303 K09566 - gmx:100791082 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04303 2 127635614 127639769 Seca2g04303 2 127635614 127639769 ECH