Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04298 ATGTCGAGCAGCCATAATCTGAAATGTGATGGCAGCTCATTTCTCATTGACATCACCAGCGCCCTTAGTAAAGTCACTGCCAATTACACTATTAGCAGTGCCAAAAGAAGGTGGCGTTTTGCTTTTATAGCAATCTGTTCCAGAAGGGTCATGCTTTCCCTGGCCAAAGAGGTCATATCCAAAAGAAAACCCCATCACTACACCAAACTCTACCAAACACAATCTTCCACTTCTAGCACCACTCTTGATATAATTGAACCCTTAGTTATCCAACCTGTAAGCAATGAAACCAATCATTATACCTTGGTTCCTGATGTTGACAAAGCCAGACTTGCTAATATGGTTAAAGACAAAAACTTGGAAGCCCTTAGTGAGTTTGGAGGAGTTGAAGGTGTTGCAGATGTTCTTGGAACCATTCCAACAAAGGGAATCCCTGGAAGTGATGATGACATTACCAAACGACGTGAGTTGTTTGGTTCAAACACTTACCAGAGGCCACCACCCAAAATCTTCCTACACTTTGTGCTGGAAGCTTTCAATGACACCACTATTCTCATCCTTCTTGTTTGTGCTGGCCTTTCCCTTGGTTTTGGCATAAAAGAACATGGACCAGGGGAAGGCTGGTATGAAGGAGGGAGTATATTTGTAGCAGTTTTTCTGGTGGTGGTAGTCAGTGCACTCAGCAATTACAGACAAGAAAGACAATTTGACAAATTGTCCAAGATAAGTAACAACATCAAAGTTGAAGTTGTGAGAAATGGCAGGCCACAACAGATATCCATCTTTGAGGTTCTTGTGGGAGATATTGCATCTCTTAAGATTGGTGATCAAATTCCAGCTGATGGATTGTTCTTAGTTGGCCATTCCTTGCAAGTAGATGAATCTAGTATGACAGGTGAGAGCGACTATGTAGAAATTGAGCCATTAAAAAGCCCATTCTTGTTGTCTGGTGCAAAGGTGGTGGATGGCTATGCTCAAATGCTTGTTACATCCGTGGGAACCAACACAGCATGGGGTCAAATGATGAGCTCAATAACAGGAGACACCAAGGAAAGAACACCATTACAAGCTCGTCTTGACAAGTTAACCTCTTCTATTGGAAAGGTTGGCCTTGCAGTTGCATTTTTGGTTCTCCTAGTGTTGTTAATTCGTTATTTCACTGGAAACTCACAAGATAAGTATGGGAATACAGAGTTCAATGGAAGCAAAACTGATATAAATGATGTGTTCAATGCTGTTGTGCGTATTGTTGCAGCTGCAGTCACTATTGTGGTTGTGGCAATCCCTGAGGGTCTGCCATTGGCTGTCACTCTCACTCTGGCTTACTCCATGAAAAGAATGATGGCAGACCATGCAATGGTGAGGAAACTTTCAGCTTGTGAAACAATGGGGTCAGCAACAGTCATATGCACAGATAAAACTGGGACTTTGACATTGAATCAGATGAGAGTAACCAAGTTTTGGTTAGGCCTAGAAAATGTCTTGGAAAATTTTTCCAATGCAATGGCCCCAAATGTTCTTGAGTTATTCCATCAGGGAGTTGGACTCAATACAACTGACAGTGTCTATAAGCCTTCATCAGTATCCGAACCTGAAATTTCAGGTAGTCCAACAGAGAAAGCTATTCTTTTGTGGGCAGTATCAGATTTAGGTATGGACATGGATGAACTGAAACAGAAACATACAGTTCTTCATGTTGAAACATTTAACTCAGAGAAGAAACGAAGTGGCGTGGCAATAAGGAAGGAAACAAACAACACAGTTCACGTGCATTGGAAAGGAGCTGCTGAGATGATACTTGCAATGTGTTCTAATTATATTGATAGTAATGGCACAAGGAAGTCCCTTGATGAAGAAAGGAGTAAACTTGAGAAGATAATTCAAGGCATGGCAGCTAGTAGCCTACGATGTATTGCTTTTGCTCACATGGAGATATCAGAAGACATTGATTATAGTGATAAGGAAAAAGCACATGAAATCCTAAGAGAAAATGGCTTGACCTTGCTTGGAATTGTTGGCCTCAAGGATCCATGCAGACCTGACGTTAAGAAAGCTGTGGAAACTTGCAAACTTGCAGGAGTTGATATTAAGATGATCACTGGAGATAACATATTTACTGCAAGGGCAATAGCAACAGAATGTGGAATATTAGATCTTAACGATTGTGCAAATGTAGGAGAAGTGGTGGAAGGTGTTGAATTCCGAAACTATACAGAGGAAGAGAGAATGGAGCAAGTTGACAAAATCCGCGTGATGGCAAGATCATCTCCTTTGGACAAACATTTGATGGTACAATGTTTAAGAAAGAAAGGCCATGTAGTTGCAGTCACAGGAGATGGTACAAATGATGCACCTGCTCTAAAAGAAGCTGATATAGGACTTTCTATGGGGATCCAAGGCACTGAGGTTGCTAAGGAAAGCTCTGATATTGTTATCTTGGATGACAACTTCAATTCTGTTGCCACTGTTTTAAGGTGGGGACGGTGTGTTTATAACAACATCCAGAAATTTATCCAGTTTCAACTAACAGTGAATGTTGCAGCTCTTGTGATAAATTTTATTGCAGCAGTTTCTTCTGGGGATGTTCCCTTAACAACAGTTCAACTACTATGGGTGAATCTCATTATGGATACTCTTGGTGCTCTGGCACTGGCTACAGAACGACCTACAAAGGAGTTAATGCAGAAAAGACCAATAGGTAGAACAGAACCTCTTATTACTAGCATCATGTGGAGAAACCTTTTAGCTCAAGCTTTGTATCAGATTGCTGTTCTGTTGGTTTTACAGTTCTATGGAAAGTCAATCTTCAATTTTTCAACGAGTTCAACTCAAGAAGTATGGAGAAACTTAATGTATTCGAAGGCATTCACAAAAACCACCTGTTTCTTGGAATTGTGGGGATTACTATTGTTCTTCAAATCATGA 2925 0.4082 MSSSHNLKCDGSSFLIDITSALSKVTANYTISSAKRRWRFAFIAICSRRVMLSLAKEVISKRKPHHYTKLYQTQSSTSSTTLDIIEPLVIQPVSNETNHYTLVPDVDKARLANMVKDKNLEALSEFGGVEGVADVLGTIPTKGIPGSDDDITKRRELFGSNTYQRPPPKIFLHFVLEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVSALSNYRQERQFDKLSKISNNIKVEVVRNGRPQQISIFEVLVGDIASLKIGDQIPADGLFLVGHSLQVDESSMTGESDYVEIEPLKSPFLLSGAKVVDGYAQMLVTSVGTNTAWGQMMSSITGDTKERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSQDKYGNTEFNGSKTDINDVFNAVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLENVLENFSNAMAPNVLELFHQGVGLNTTDSVYKPSSVSEPEISGSPTEKAILLWAVSDLGMDMDELKQKHTVLHVETFNSEKKRSGVAIRKETNNTVHVHWKGAAEMILAMCSNYIDSNGTRKSLDEERSKLEKIIQGMAASSLRCIAFAHMEISEDIDYSDKEKAHEILRENGLTLLGIVGLKDPCRPDVKKAVETCKLAGVDIKMITGDNIFTARAIATECGILDLNDCANVGEVVEGVEFRNYTEEERMEQVDKIRVMARSSPLDKHLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMQKRPIGRTEPLITSIMWRNLLAQALYQIAVLLVLQFYGKSIFNFSTSSTQEVWRNLMYSKAFTKTTCFLELWGLLLFFKS. 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04298 974 Gene3D - 147 346 - -
Seca2g04298 974 SFLD C1.7: P-type atpase like 452 830 - -
Seca2g04298 974 PRINTS P-type cation-transporting ATPase superfamily signature 293 307 - -
Seca2g04298 974 PRINTS P-type cation-transporting ATPase superfamily signature 670 681 - -
Seca2g04298 974 PRINTS P-type cation-transporting ATPase superfamily signature 777 796 - -
Seca2g04298 974 PRINTS P-type cation-transporting ATPase superfamily signature 470 484 - -
Seca2g04298 974 PRINTS P-type cation-transporting ATPase superfamily signature 692 702 - -
Seca2g04298 974 PRINTS P-type cation-transporting ATPase superfamily signature 801 813 - -
Seca2g04298 974 Pfam E1-E2 ATPase 246 448 - -
Seca2g04298 974 Gene3D - 467 822 IPR023214 -
Seca2g04298 974 FunFam Calcium-transporting ATPase 794 966 - -
Seca2g04298 974 SUPERFAMILY Calcium ATPase, transduction domain A 245 344 IPR008250 -
Seca2g04298 974 PRINTS H+-transporting ATPase (proton pump) signature 809 834 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g04298 974 PRINTS H+-transporting ATPase (proton pump) signature 777 793 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g04298 974 PRINTS H+-transporting ATPase (proton pump) signature 623 641 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g04298 974 Pfam Cation transporter/ATPase, N-terminus 127 194 IPR004014 -
Seca2g04298 974 Pfam Cation transporting ATPase, C-terminus 862 965 IPR006068 -
Seca2g04298 974 SUPERFAMILY HAD-like 468 882 IPR036412 -
Seca2g04298 974 Gene3D - 480 677 IPR023299 GO:0000166
Seca2g04298 974 Pfam haloacid dehalogenase-like hydrolase 468 791 - -
Seca2g04298 974 PANTHER CATION TRANSPORTING ATPASE 91 945 - -
Seca2g04298 974 SMART Cation_ATPase_N_a_2 125 199 IPR004014 -
Seca2g04298 974 NCBIfam HAD-IC family P-type ATPase 748 857 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g04298 974 NCBIfam HAD-IC family P-type ATPase 412 495 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g04298 974 CDD P-type_ATPase_Ca_PMCA-like 151 910 - -
Seca2g04298 974 Gene3D - 177 945 - -
Seca2g04298 974 FunFam Calcium-transporting ATPase 223 346 - -
Seca2g04298 974 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 477 674 IPR023299 GO:0000166
Seca2g04298 974 SFLD p-type atpase 452 830 IPR044492 -
Seca2g04298 974 FunFam Calcium-transporting ATPase 672 822 - -
Seca2g04298 974 NCBIfam calcium-translocating P-type ATPase, PMCA-type 113 967 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca2g04298 974 SUPERFAMILY Calcium ATPase, transmembrane domain M 126 946 IPR023298 -
Seca2g04298 974 ProSitePatterns E1-E2 ATPases phosphorylation site. 472 478 IPR018303 -
Seca2g04298 974 FunFam Calcium-transporting ATPase 480 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04298 Seca-Chr2 127597547 127600526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04298 34 937 Primary Pumps ATPases AT3G63380 70.640 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04298 K01537 - gmx:100790034 1537.7