Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04295 ATGTTCCCCACAGCTATTTCCAATTCTACTACTTCTTTGTCTGAAGATGCCAGTGTCTCTTCTGTTACAAGAGTTCAAGACTTGGTTGGACTCAATCATCTGGTCTCTCCTCAGCAACAACCTCAAAAGATCAAGAAAAAAAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAGGTGATTGCTTTATCCCCAAAGGCCCTTTTAGCTACTAATAGATTTGTGTGTGAGATCTGCCATAAGGGTTTCCAGAGAGATCAGAATCTACAGCTTCATAGGAGGGGACATAACCTGCCATGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAGAAGAAAGTATATGTTTGCCCTGAACCTTCTTGTGTTCACCACAACCCTTCAAGGGCTTTAGGGGATCTTACAGGAATTAAGAAACACTATTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACTCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAGTGTCAGCAAACCAATTAGCCATCACTGCAACAAACCCATTAGTCCACTCTCTCTTTCTCTTCCAAACCCAAACACAACCCAACTTTCATAACAACAACCACTTCAGTACTCCCTCATGGGACTCATCATCACAACAAAACCCTAACCCTACCAACATTCTTCCCCACCACATCAAGCCAGAACTTCAAACCTTCCAGAACCTCACCACCACCACCACCACCCTCCCTCCTCCCTCACTTGTTCAACAACAACACCCCAAGAGCATGATAACCTCACCCTTCCACGTGTCCTCCTCCAACACAGCCACGTCAGCAGCATACATGTCAGCCACTGCCCTCCTTCAAAAGGCTGCAACCGTCGGTGCCGCTGCCATCACGGGCCCACCCTCTGCTTCTGTTGGTGTCGGGTCAATGACTCACCTCAATATGCCCGAGTTTGGAACGGTGAGTCATCATCAACTCGACTCGGTGGTACTGCCTGATCAGTACATGACCATGACACGGAACCTCAAGAGCGACCATAATCTCACTAGAGACTTTCTGGGACTAACGGGAGATGCCAACGGCGGAGTTAACGGAGGTAACGGCGCCGCGGTTGATGTTAGCCTGAACGTGAAGGATATGCTAACCTTCACGGGGGGCGTAGACATTCACCACCACCACGCGCTGTTGAAGCCACAACAAGGTTTTGAATTCCTTGGGACAGCCACTGCCCCGGAAACGTGGGGGAATTGTTGA 1359 0.4776 MFPTAISNSTTSLSEDASVSSVTRVQDLVGLNHLVSPQQQPQKIKKKRSLPGNPDPDAEVIALSPKALLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARVSANQLAITATNPLVHSLFLFQTQTQPNFHNNNHFSTPSWDSSSQQNPNPTNILPHHIKPELQTFQNLTTTTTTLPPPSLVQQQHPKSMITSPFHVSSSNTATSAAYMSATALLQKAATVGAAAITGPPSASVGVGSMTHLNMPEFGTVSHHQLDSVVLPDQYMTMTRNLKSDHNLTRDFLGLTGDANGGVNGGNGAAVDVSLNVKDMLTFTGGVDIHHHHALLKPQQGFEFLGTATAPETWGNC. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04295 452 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Seca2g04295 452 FunFam protein indeterminate-domain 12-like 53 121 - -
Seca2g04295 452 MobiDBLite consensus disorder prediction 238 257 - -
Seca2g04295 452 Gene3D Classic Zinc Finger 115 198 - -
Seca2g04295 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Seca2g04295 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 399 IPR031140 -
Seca2g04295 452 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Seca2g04295 452 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Seca2g04295 452 Gene3D Classic Zinc Finger 74 114 - -
Seca2g04295 452 SMART c2h2final6 74 96 IPR013087 -
Seca2g04295 452 SMART c2h2final6 150 170 IPR013087 -
Seca2g04295 452 SMART c2h2final6 115 145 IPR013087 -
Seca2g04295 452 MobiDBLite consensus disorder prediction 35 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04295 Seca-Chr2 127543373 127547170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04295 11 445 IDZ Gene Family AT4G02670 47.345 4.27e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g04295 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04295 K25870 - gmx:100788975 591.267