Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04293 ATGAATTATCTATACCCTGTAAAAGAAGAGTACTTGGAACCAACATCATCATCATCAACATCTTACCTTGGAAGTGATGATGACCCATCAATGGTTCCTCCTCCAAGGCCAATGGAGGGGCTTCATGACGTAGGACCACCCCCATTTCTCACCAAGACCTTTGATGCAGTGGAGGACCCTACAACCAGCCACATAGTTTCATGGAACAGAGGTGGTGCTAGCTTTGTGGTTTGGGATCCACATACTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGGTTCCTAAGAGGGCATAGGCACTTGTTGGCAAACATAAGGAGAAGAAAGCATCAAAATTCCCAACCTACTTCTTCCCAACAAGCACAAGGTCACTGTGTTGAAGTTGGTCGTTTTGGACTAGATGAAGAGATTGATCGTTTGAGGCGTGACAAGCAAGTGTTAATGATGGAGCTTGTGAAGCTTAGACAGCAGCAGCAGAATACCAGATCCTACCTTCAAACAATGGAAGAAAGGTTAAGAGGGACAGAAATTAAACAGCAACAAATGATGGCTTTCTTAGCTAGAGCAATGAAAAATCCAACCTTTATTCAGCAGTTACTCCAACAAAAGGAGAAGAGAAAGGAGCTTGAAGAAGCAATGACTAAAAAGAGGAGAAGACCAATTGAGCAAGGACCTAGTGGTGGTGAAAGAAGGAACAGTGTTAAAGTTGAGCCAACAGCATTTGGGGAATTTGGATTTGAAGTGTCAGAGCTAGAAGTGTTAGCAATGGAAATGCAGGGTTTTGGTAGGGAGAGGAGAGAACAAGAGGAAGTGGCTGAGGGACTAGAACCTCAAGAGAGGCTGGAAAAAGAACTTGATGAAGGGTTTTGGGAAGAACTCTTCAGTGAGAATTTTGAGGGTGAATTAGACATTCCAAACTCTCATGATGAAGATGAAGATGTCAATGTGTTAGCCAATCGGTTAGGTTACTTGGGTTCAAGTCCTAAGTGA 1080 0.425 MNYLYPVKEEYLEPTSSSSTSYLGSDDDPSMVPPPRPMEGLHDVGPPPFLTKTFDAVEDPTTSHIVSWNRGGASFVVWDPHTFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKHQNSQPTSSQQAQGHCVEVGRFGLDEEIDRLRRDKQVLMMELVKLRQQQQNTRSYLQTMEERLRGTEIKQQQMMAFLARAMKNPTFIQQLLQQKEKRKELEEAMTKKRRRPIEQGPSGGERRNSVKVEPTAFGEFGFEVSELEVLAMEMQGFGRERREQEEVAEGLEPQERLEKELDEGFWEELFSENFEGELDIPNSHDEDEDVNVLANRLGYLGSSPK. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04293 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 279 IPR027725 -
Seca2g04293 359 MobiDBLite consensus disorder prediction 12 45 - -
Seca2g04293 359 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04293 359 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04293 359 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04293 359 MobiDBLite consensus disorder prediction 236 266 - -
Seca2g04293 359 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Seca2g04293 359 Gene3D - 42 139 IPR036388 -
Seca2g04293 359 FunFam Heat shock transcription factor 1 42 139 - -
Seca2g04293 359 Coils Coil 167 187 - -
Seca2g04293 359 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04293 359 MobiDBLite consensus disorder prediction 293 312 - -
Seca2g04293 359 MobiDBLite consensus disorder prediction 236 255 - -
Seca2g04293 359 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04293 359 MobiDBLite consensus disorder prediction 12 26 - -
Seca2g04293 359 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04293 359 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04293 Seca-Chr2 127494428 127507019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04293 27 357 HSF AT3G22830 54.054 8.85e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca2g04293 HSF_DNA-bind 7.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04293 K09419 - gmx:100794264 574.318