Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04292 ATGAGGACTTTCTTCCCTGCTGAATCCTGTAAAGAAGCGCACTCAAATGCTTTAAATTCTCAGTCATGGCTCCACATTGAAAGAGGGAAGCTTCCCAATTGGTCATCACACTCCGCTTCTGCTTCAATAGATTCTCTAATCAAGGTCCCACAGCCACCAATACTCCCCATCTTTAAACCTGTTGATTATGTGGAAGTTTTAGCTCAAATCCATGAAGAACTTGAGTCTTGTCCCCCACAAGAGCGATCAAATCTGTTTTTGTTACAATACCATGTCTTTAAGGGCCTTGGGGAAATTAAATTGATGCGTAGAAGCCTCCATGGAGCTTGGCAGAAAGCCAACACTGTTCATGAGAAGATTATATTTGGGGCATGGTTGAAATATGAGAAGCGAGGGGAAGAGCAAATAACCGACTTGCTAATGACTTGTGGTAAATGTGCAAAGGAGTTTAGGCCAATAGATGTAGCATCTCATCTTCCATTTGAGATAAATGCAACTTCCCAGGAGAGAATGACCAATGTGAACAATATTTCACAGTATGTTACTTTTAAAATTGGAAATGAAAAGATAGTTTGTGATAGACAAAAAATTTCTGAACTTTCTGCACCATTTCATGCAATGCTGAAAGGGTATTTCAGCGAATCACTCTCTGAGACTATAGATTTGTCTGAAAATAATATCTCTCCTTCAGGTATGAGGGCAATAAGTTATTTCTGTTTGACTGGCAGTTTAATTGAGGTCCCTCCAAATCTTTTGTTGGAGATATTAGTTTTTGCGAACAAATATTGTTGTGAAAGACTTAAGGATGCTTGCGATAGAAGACTTGCATCCTTGATTTCCTCCAAAGAAGATGCTGTGGAGCTCATGGAATATGCTCTTGATGAGAATTCAGCTGTCCTTGCTGCATCTTGTTTACAAGTCCTTTTACGTGATCTTCCAAACTGTTTGAATGATAATCGGGTGGTCGAGATATTTATTCATGCTAATAGTCAGCAGCTGGCCGTCATGGCTGGGCGAGGCTTATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCAATGAACCTTAATTCTAGTTCAGAGACAACAGCTCATATCCTACAACGGTTAGTTGATTTTGCTGAGAATGACAAGCAGAGACGGTTGGCTTTACATCAATTGGGATGTGTAAGACTCTCGAGGAAAGAATATGATGAAGCACGTTGTCTTTTCGAGGGAGCTATGAATGCAGGCCATATTTATTCCATTGCAGGTTTAGCTAGACTGGACCATATAAAGGGTGAGAAGCATTTATTTTATGAGAAGCTCAGCTCAGTCATTTCATCTGTTACTCCACTTGGATGGATGTATCAGGAGAGATCACTATATTGTGATGGTGATATGAGGTGGGAGGACCTTGAGAAAGCAAGTGATCTGGACCCTACTCTTATATATCCTTACATGTATAGGGCTGCCTCTTTAATGAGGACACAGAATGCTCAAGCTGCACTGGCAGAAATCAACCGGATTCTTGGGTTTAAACTTTCATTAGAATGCTTGGAATTACGTTTTTTTATCTATCTGGCCCTTGAGGACTACAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACACTGCGTTCAGATTATAGAATGTTTGAGGGGCGTGTTGCTGCATCCCAGCTCTGTACTCTTGTCCGTGAGCATGTTGAACATTGGACAACAGCAGATTGTTGGGCACGATTATATGACTGTTGGTCTGCAGTTGATGATATTGGGTCTCTATCTGTTATCTACCAGATGCTTGAATCTGATGCAGCAAAAGGCGTTCTATACTTCAGACAGTCATTGCTTCTCCTGAGGCTAAGCTGTCCCGAGGCAGCTATGCGGAGTTTACAGTTAGCTCGACAACATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTGTATGATACAGGTCATTATGAGGAAGGGCTCAGGAAAGCTGAAGAGTCTATCAGCATCAAAAGATCTTTTGAGGCCTTCTTCTTAAAGGCCTATGCATTGGCTGACTCTAGTATAGATACGTCTTGTTCTTCAACTGTTATTTCACTTCTGGAAGATGCTTTGAAGTGTCCTTCAGATAACCTGCGCAAAGGTCAGGCACTGAACAATCTTGGAAGTGTTTATGTTGACTGTGGGAAATTGGATTTGGCTGCTGATTGCTATATCAATGCCCTTAAAATCCGACACACCCGAGCTCATCAGGGTCTTGCTCGTGTTCATTGTCTCAGAAATGATAAGGCTGCTGCTTATATGGAAATGACTGAACTTATTGAGAAGGCAAAAAACAATGCATCTGCCTATGAGAAAAGATCTGAGTACTGTGATCGTGACCAAGCAAAGGCAGATCTGGAGATGGTGACTAGATTAGATCCACTTCGTGTGTATCCATATCGATATCGTGCTGCAGTATTAATGGACAACCATAAGGAAGAGGAAGCCATTGCCGAACTTTCCAGAGCAATTGCATTTAAAGCTGATTTGCACCTCTTACATCTACGTGCAGCATTCCATGAACACAAAGAGGATGTCATAGGTGCTCTAAGAGACTGTCGTGCTGCACTCTCAGTGGACCCAAATCATCAAGAAATGTTAGAACTTCACAGTCGTGTTAATAGGCATGAGCCATGA 2661 0.4149 MRTFFPAESCKEAHSNALNSQSWLHIERGKLPNWSSHSASASIDSLIKVPQPPILPIFKPVDYVEVLAQIHEELESCPPQERSNLFLLQYHVFKGLGEIKLMRRSLHGAWQKANTVHEKIIFGAWLKYEKRGEEQITDLLMTCGKCAKEFRPIDVASHLPFEINATSQERMTNVNNISQYVTFKIGNEKIVCDRQKISELSAPFHAMLKGYFSESLSETIDLSENNISPSGMRAISYFCLTGSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLISSKEDAVELMEYALDENSAVLAASCLQVLLRDLPNCLNDNRVVEIFIHANSQQLAVMAGRGLFALFCFLSEVSMNLNSSSETTAHILQRLVDFAENDKQRRLALHQLGCVRLSRKEYDEARCLFEGAMNAGHIYSIAGLARLDHIKGEKHLFYEKLSSVISSVTPLGWMYQERSLYCDGDMRWEDLEKASDLDPTLIYPYMYRAASLMRTQNAQAALAEINRILGFKLSLECLELRFFIYLALEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLSCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLRKAEESISIKRSFEAFFLKAYALADSSIDTSCSSTVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHQGLARVHCLRNDKAAAYMEMTELIEKAKNNASAYEKRSEYCDRDQAKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVIGALRDCRAALSVDPNHQEMLELHSRVNRHEP. 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04292 886 Gene3D Tetratricopeptide repeat domain 775 885 IPR011990 GO:0005515
Seca2g04292 886 SUPERFAMILY TPR-like 383 739 IPR011990 GO:0005515
Seca2g04292 886 PANTHER ETO1-RELATED 1 885 IPR044631 GO:0010105
Seca2g04292 886 Coils Coil 761 781 - -
Seca2g04292 886 SMART BTB_4 179 279 IPR000210 GO:0005515
Seca2g04292 886 Gene3D Tetratricopeptide repeat domain 598 773 IPR011990 GO:0005515
Seca2g04292 886 Gene3D Tetratricopeptide repeat domain 353 561 IPR011990 GO:0005515
Seca2g04292 886 Gene3D Potassium Channel Kv1.1; Chain A 178 319 IPR011333 -
Seca2g04292 886 SUPERFAMILY POZ domain 181 275 IPR011333 -
Seca2g04292 886 SMART tpr_5 635 668 IPR019734 GO:0005515
Seca2g04292 886 SMART tpr_5 709 742 IPR019734 GO:0005515
Seca2g04292 886 SMART tpr_5 838 871 IPR019734 GO:0005515
Seca2g04292 886 ProSiteProfiles TPR repeat profile. 709 742 IPR019734 GO:0005515
Seca2g04292 886 SUPERFAMILY TPR-like 692 877 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04292 Seca-Chr2 127477708 127485708 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04292 - - gmx:100793740 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05745 8 149750154 149754981 Seca2g04292 2 127477708 127485708 PCT