Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04288 ATGGAGCAATATGAAATTCTAGAACAGATTGGCAAAGGCTCGTTTGGTTCTGCTCTGCTTGTGAGGCACAAGCACGAAAAGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCTCGCCAAACTGACAGAACCCGTAGGTCTGCTCTCCAGGAGATGGAGCTTATATCAAAAGTTCGAAATCCATTTATTGTGGAATATAAAGATTCCTGGGTAGAGAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTAACTTTCCTGAAGAGAAGCTTTGTAAGTGGCTTGTCCAGTTGTTGATGGCACTTGATTACTTACATGCAAATCATATTCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACGAAAGATCAAGATATACGTCTGGGTAAATGTCCTTACTCTTTATATCCCTCTTGGACTTAA 474 0.3987 MEQYEILEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSALQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGKCPYSLYPSWT. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04288 157 Pfam Protein kinase domain 4 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04288 157 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca2g04288 157 SUPERFAMILY Protein kinase-like (PK-like) 1 145 IPR011009 -
Seca2g04288 157 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Seca2g04288 157 Gene3D Transferase(Phosphotransferase) domain 1 79 148 - -
Seca2g04288 157 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 146 - -
Seca2g04288 157 SMART serkin_6 4 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04288 157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca2g04288 157 ProSiteProfiles Protein kinase domain profile. 4 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04288 157 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04288 Seca-Chr2 127425261 127428032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04288 1 145 AGC Kinase Gene Family AT1G45160 30.405 6.88e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca2g04288 Pkinase 2.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04288 K08857 - gmx:100805201 285.804