Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04279 ATGAACGTTGAGAGTGTGCACCGAGTGGCCATACCACCCCCTCAACCTTTCTTCATTTCTCTCAAGTGCTCCCTCAAGGAGACTTTCTTCCCAGATGACCCCTTGAGAAAGTTCAAGAACCAACCAGCCTCTAAGAGGTTCGTGCTTGGCCTTCAGTACTTTTTGCCCATATTGGAGTGGGCACCCCAATACACCTTTCAGTTCCTCAAATCAGACCTCATAGCTGGGATCACCATTGCTAGTTTGGCTATTCCTCAAGGCATCAGTTACGCCAAACTCGCCAACCTCCCTCCAATTCTTGGACTCTATTCGAGCTTTATACCACCGTTGATATATGCTATGATGGGTAGCTCGAGGGACTTGGCAGTGGGAACTGTGGCCGTTGGATCGCTTCTGATGGCTTCCATGTTGGGTCGTGAGGCTAATCCCAACGAGAACCCAAAGCTTTTTCTTCATCTTGCATTCACAGCTACTTTCTTTGCTGGAGTTTTGCAAGCATCACTGGGTCTCTTTAGGTTAGGGTTTATCGTGGATTTTCTGTCACATGCAGCGATAGTAGGATTCATGGGGGGAGCAGCCACAGTGGTTTGCCTGCAACAGCTCAAATCGATTCTAGGCCTTCAACATTTCACCCATCAGGCTGATCTCGTCTCAGTTATGCGCTCTGTTTTTACCCAAATTCATCAGTGGAGGTGGGAAAGCGCTGTGTTGGGATGCTGCTTTATTTTCTTCCTCCTGGTCACAAGATACTTTAGCAAACGACGACCCAAGTTGTTTTGGGTGTCAGCAATGGCGCCGTTAACGTCCGTTATATTGGGAAGTATGCTGGTTTATGTCACTCACGCCGAGAAGCACGGCGTTCAAGTGATTGGAGACTTGAAGAAGGGGCTAAATCCACCTTCGGTGACGGATTTGGTGTTTGTGTCGCCTTATATGGGCACAGCTATCAAAACTGGATTTATTACTGGCATTATAGCGTTGGCTGAAGGAATAGCAGTCGGAAGAAGCTTTGCCATGTTTAAGAACTATCATATTGATGGCAATAAAGAGATGATAGCTATTGGGACCATGAATATTTTTGGTTCCTTCACCTCTTGCTACCTCACAACAGGACCATTTTCACGTTCAGCTGTGAACTACAATGCTGGATGCAAGACTGCAGCATCAAACATTGTAATGTCAATTGCAGTGATGTTGACATTGTTATTCCTAACACCCTTGTTCTATTACACTCCCCTGGTGGTGCTATCAGCCATAATTGTATCTGCAATGCTTGGTCTCATAGATTATCAAGCAGCCATCCATTTGTGGAAAATTGACAAATTTGATTTCTTAGTGTGCTTCAGTGCATATATTGGAGTAGTCTTTGGCAGTGTTGAAATTGGCTTAGTAATAGCAGTTGCAATATCTGTACTTCGAGTGCTTCTATTTATTGCAAGGCCAAGGACATTTCTCTTAGGCAACATTCCAAATTCTGTAGTATACAGAAATGTAGAACACTATCCAAATGCACACCATGTTCCTGGAATCCTAATTCTTGAAATTGATGCACCAATTTACTTTGCAAATGCAAGCTATTTAAGAGAAAGGATTACAAGGTGGATTGATGAAGAGGAAGATAGAATTAAAGCTACAGGGAAGACCAGTTTGCAGTATGTTATAATGGATATGACTGCTGTTGGGAACATTGATACAAGTGGAATAAGCATGCTTGAAGAGTTTAAGAAGTCTGTTGACAGAAGAGGGCTACAACTCGTTTTGGTCAATCCTGTAAGCGAGGTGATGAAGAAGCTGAACAAATCAAAGTTCCTTGATGAATTAGGACATAAATGGATCTATCTGACAGTTGAAGAGGCTGTTGGGGTATGCAACTTTATACTCCATACACAAAAACCAAACCCCATGAAAGATGAATCAGAAGGTTGGAACAGTGTGTGA 1938 0.4345 MNVESVHRVAIPPPQPFFISLKCSLKETFFPDDPLRKFKNQPASKRFVLGLQYFLPILEWAPQYTFQFLKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMASMLGREANPNENPKLFLHLAFTATFFAGVLQASLGLFRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKSILGLQHFTHQADLVSVMRSVFTQIHQWRWESAVLGCCFIFFLLVTRYFSKRRPKLFWVSAMAPLTSVILGSMLVYVTHAEKHGVQVIGDLKKGLNPPSVTDLVFVSPYMGTAIKTGFITGIIALAEGIAVGRSFAMFKNYHIDGNKEMIAIGTMNIFGSFTSCYLTTGPFSRSAVNYNAGCKTAASNIVMSIAVMLTLLFLTPLFYYTPLVVLSAIIVSAMLGLIDYQAAIHLWKIDKFDFLVCFSAYIGVVFGSVEIGLVIAVAISVLRVLLFIARPRTFLLGNIPNSVVYRNVEHYPNAHHVPGILILEIDAPIYFANASYLRERITRWIDEEEDRIKATGKTSLQYVIMDMTAVGNIDTSGISMLEEFKKSVDRRGLQLVLVNPVSEVMKKLNKSKFLDELGHKWIYLTVEEAVGVCNFILHTQKPNPMKDESEGWNSV. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04279 645 Pfam Sulfate permease family 69 449 IPR011547 GO:0016020
Seca2g04279 645 FunFam Sulfate transporter 31 480 626 - -
Seca2g04279 645 Gene3D STAS domain 480 625 IPR036513 -
Seca2g04279 645 CDD STAS_SulP_like_sulfate_transporter 501 616 - -
Seca2g04279 645 ProSiteProfiles STAS domain profile. 500 623 IPR002645 -
Seca2g04279 645 SUPERFAMILY SpoIIaa-like 501 623 IPR036513 -
Seca2g04279 645 Pfam STAS domain 501 619 IPR002645 -
Seca2g04279 645 ProSitePatterns SLC26A transporters signature. 98 119 IPR018045 GO:0008271|GO:0008272
Seca2g04279 645 PANTHER SULFATE TRANSPORTER 20 624 IPR001902 GO:0016020|GO:0055085
Seca2g04279 645 NCBIfam sulfate permease 56 619 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04279 Seca-Chr2 127320417 127329678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04279 7 633 Inorganic Solute Cotransporters AT4G02700 68.949 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04279 K17471 - gmx:100804670 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04279 2 127320417 127329678 Seca2g04279 2 127320417 127329678 ECH