Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04263 ATGGAAAGCTGCACGAGCAGCAACAACCAGTGGAGAGCTGAGGAAGCCATTGGTGGCAATGCTGAAGCAATTCAAGCCCTCAGAGAACTCATAATATACCCTCTTCACTTTTCCCGCCAAGCACAGAAGCTTGGCCTTAAATGGCCAAGAGGGTTGCTGCTGTATGGTCCACCAGGCACTGGAAAGACAAGTTTGGTACGGGCAGTTGTTCGGGAATGCGGGGCACATTTGACAATCATCAGTCCACACTCTGTTCATAGAGCACATGCTGGTGAAAGTGAAAGAATTCTCCGTGAGGCTTTTTCAGAGGCGTCATCTCATGTAGCCTTGGGCAAGCCATCAGTTATCTTTATAGATGAAATAGACGCACTCTGTGCTCGTCGAGATTCTAAAAGGGAGCAAGATGCCCGAGTTGCCTCCCAACTCTTTACACTGATGGACTCAAACAAGCCAACCTCTTCTTCACCAGGTGTAGTGGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCCCTAAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACAGTCCCAAATGAAGAGGAACGCTTTCAAATTCTAAAGCTGTATACAAAGAAGATTCCCTCGGATTCATCTGTTGACTTAAAATCCATTGCTGCATCATGCAATGGATATGTCGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGACTGCAGTTAAAAGGTCCTCAAATACAAACAAAGATGCTAGTGATTTCAGTTTAACAATGGAAGATTGGAAAAATGCAAGGTCTGTTGTTGGTCCAAGTATAACTAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGGGGATTGAAAGATTTGAAGAAAAAGCTCCAGCAAGCTGTTGAATGGCCTATGAAGCATTCTTCTGCATTTTCAAGATTGGGAATAACCCCTTTACGCGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCACATGCTGCAAAAGCCTCTTTCTTTTCCTTGAGGTTTGAATAA 1062 0.4501 MESCTSSNNQWRAEEAIGGNAEAIQALRELIIYPLHFSRQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHSVHRAHAGESERILREAFSEASSHVALGKPSVIFIDEIDALCARRDSKREQDARVASQLFTLMDSNKPTSSSPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEERFQILKLYTKKIPSDSSVDLKSIAASCNGYVGADLEALCREATMTAVKRSSNTNKDASDFSLTMEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKDLKKKLQQAVEWPMKHSSAFSRLGITPLRGILLHGPPGCSKTTLAKAAAHAAKASFFSLRFE. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04263 353 FunFam Cell division control protein 48 homolog B 189 271 - -
Seca2g04263 353 CDD RecA-like_CDC48_NLV2_r1-like 16 186 - -
Seca2g04263 353 Gene3D - 189 270 - -
Seca2g04263 353 FunFam Cell division control protein 48 homolog B 9 187 - -
Seca2g04263 353 SMART AAA_5 48 190 IPR003593 GO:0016887
Seca2g04263 353 Pfam ATPase family associated with various cellular activities (AAA) 52 186 IPR003959 GO:0005524|GO:0016887
Seca2g04263 353 Pfam ATPase family associated with various cellular activities (AAA) 322 350 IPR003959 GO:0005524|GO:0016887
Seca2g04263 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 269 IPR027417 -
Seca2g04263 353 Gene3D - 271 353 IPR027417 -
Seca2g04263 353 PANTHER AAA-FAMILY ATPASE 14 350 - -
Seca2g04263 353 Pfam AAA+ lid domain 210 253 IPR041569 -
Seca2g04263 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 350 IPR027417 -
Seca2g04263 353 Gene3D - 4 187 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04263 Seca-Chr2 127084806 127091880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04263 253 351 Calmodulin-binding Proteins AT3G56690 49.495 2.81e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04263 - - gmx:100814288 607.831