Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04240 ATGGATCATCATCGCACTGTCAGAAGAAAGAAGTCGAATGAAAATATACCATATTACAAATGCTTTGCCTCCCAACCTCACCAAGATCATTCGCCTGAGATTCTTTTACATCTCTCGCTTCTCAACAATGCTTTCATAACCTCCGACTCATATGACAACTCTGCAAGGAGAGTCCTTCAATTTATCTGTCTACTCGCTAAAAATGAGGAACATTTGGATACTATAGTTAATTGTGGTGCTGTCCCTGCTGTGTTGAAACTTCTCCGGTCACAAGATGCAGATAGAGACAAAGTCAGCCTCTCTCACCGGCTTGAGTTGGAGAAAGGATGTGCAGTCATCCTAGGGCTTCTTGCTGTCAAACCAGAGTATCAACAACTAATTGTTGATGCTGGAGCGTTGCCCTATCTAGTGGATTTGTTAAGGAGGCACAGGGCTGGTAGCATTTCTCCAGAACTTACTGGTATGCTTAAGAAAGTAGCTGATGCAATAACCAACCTTGCTCATGAGAATACCAGCGTTAAGACCCTCGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGATATTAAGGTACGGAGGGCAGCTGCAGCAGCCTTGCGGACTCTTGCATTTAAAAATGATGAAAATAAGAATCAGATTGTTGGATGCAATGCGTTACCCACTCTTGTACTAATGCTTCTATCAGGCGATCCTACAATACATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCCTCGCCAAATATTAAGAAAGATGTTATTCAAGCTGGGGTTTTACAACCCGTCATTGGCTTACTGAGTTCCCCCTGTTTGGAGAGCCAAAGAGAAGCTGCTCTTTTAATTGGTCAATTTGCTGCAACAGATTCAGAATGCAAGGTTCACATTGCACAAAGAGGGGCTATAAAACCATTAATTGACATGCTTAAGTCTCCAGATGCACATCTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCATACCGGAGGTATAGAGCCTCTGCTGAGTCTTCTTGACTCAAAGAATAGGGCAGTCCAACACAATGCAGCTTTTGCTCTATATGGTCTTGCTGATAATGAGGACAATGTTGCAGATATTATTAAGGCTGGTGGTTTTCAAAAACTGCAAGATGGACATTTCAAAGTTCCACCTACTAAAGAGTGTGTATCAAAGACGTTAAAGAGATTAGAGGAGAAGATGGAAGGACAAGTCCTGAGACACCTGTTATATCTTATGCGCTTTGCAGAAAAAGGTGTTCAGAGACATGTAGCTCTTGCTCTTGCTCATTTATGTTCCCTTGACGATAGTAAAACTATTTTTATTGACAATAATGGATTAGAAGTGCTGCTGGATCTTCTTGAATCTACAAACCTAAAGCAGAAGGGTGAAGCTTCAGCAGCACTTTACAAGTTGGTTACCAAATCCACATGTGTCTCTCTTGTTGATCCTGCTCCTCCATCACCATCTCCACAGGTGTACTTGGGTGAGCAATATGTAAACAATCCTAAACTTTCTGATGTCACATTCTTAGTTGAAGGTGTAGAAGCTGCTGCCAAATTCTTCTATTGCTATTTTTTTTTTTGTTTACTTATTGATTTTGATATATGTACTAATGTATGTACTAATTTATCTTGTTTTCCTTTCTTCAGGCAAAAGGTTTTATGCTCATAG 1728 0.4103 MDHHRTVRRKKSNENIPYYKCFASQPHQDHSPEILLHLSLLNNAFITSDSYDNSARRVLQFICLLAKNEEHLDTIVNCGAVPAVLKLLRSQDADRDKVSLSHRLELEKGCAVILGLLAVKPEYQQLIVDAGALPYLVDLLRRHRAGSISPELTGMLKKVADAITNLAHENTSVKTLVRMEGGIPPLVELLEFNDIKVRRAAAAALRTLAFKNDENKNQIVGCNALPTLVLMLLSGDPTIHYEAVGVIGNLVHSSPNIKKDVIQAGVLQPVIGLLSSPCLESQREAALLIGQFAATDSECKVHIAQRGAIKPLIDMLKSPDAHLREMSTFALGRLAQDSHNQAGIAHTGGIEPLLSLLDSKNRAVQHNAAFALYGLADNEDNVADIIKAGGFQKLQDGHFKVPPTKECVSKTLKRLEEKMEGQVLRHLLYLMRFAEKGVQRHVALALAHLCSLDDSKTIFIDNNGLEVLLDLLESTNLKQKGEASAALYKLVTKSTCVSLVDPAPPSPSPQVYLGEQYVNNPKLSDVTFLVEGVEAAAKFFYCYFFFCLLIDFDICTNVCTNLSCFPFFRQKVLCS. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04240 575 Gene3D - 37 337 IPR011989 -
Seca2g04240 575 Gene3D - 418 502 IPR011989 -
Seca2g04240 575 SUPERFAMILY ARM repeat 419 494 IPR016024 -
Seca2g04240 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 79 132 IPR000225 GO:0005515
Seca2g04240 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 348 390 IPR000225 GO:0005515
Seca2g04240 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 307 349 IPR000225 GO:0005515
Seca2g04240 575 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 553 IPR044282 -
Seca2g04240 575 SUPERFAMILY ARM repeat 48 395 IPR016024 -
Seca2g04240 575 Pfam Armadillo/beta-catenin-like repeat 256 288 IPR000225 GO:0005515
Seca2g04240 575 Pfam Armadillo/beta-catenin-like repeat 212 251 IPR000225 GO:0005515
Seca2g04240 575 Pfam Armadillo/beta-catenin-like repeat 174 209 IPR000225 GO:0005515
Seca2g04240 575 Pfam Armadillo/beta-catenin-like repeat 296 335 IPR000225 GO:0005515
Seca2g04240 575 Gene3D - 338 417 IPR011989 -
Seca2g04240 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 223 265 IPR000225 GO:0005515
Seca2g04240 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 131 181 IPR000225 GO:0005515
Seca2g04240 575 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 216 IPR000225 GO:0005515
Seca2g04240 575 SMART arm_5 120 168 IPR000225 GO:0005515
Seca2g04240 575 SMART arm_5 337 377 IPR000225 GO:0005515
Seca2g04240 575 SMART arm_5 254 294 IPR000225 GO:0005515
Seca2g04240 575 SMART arm_5 212 252 IPR000225 GO:0005515
Seca2g04240 575 SMART arm_5 296 336 IPR000225 GO:0005515
Seca2g04240 575 SMART arm_5 452 492 IPR000225 GO:0005515
Seca2g04240 575 SMART arm_5 68 119 IPR000225 GO:0005515
Seca2g04240 575 SMART arm_5 170 210 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04240 Seca-Chr2 126706606 126713799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04240 247 494 U-box Gene Family AT2G23140 26.923 8.36e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04240 - - nta:107795514 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04240 2 126706606 126713799 Seca2g04240 2 126706606 126713799 ECH