Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04229 ATGGCGACGCCGCCAAATAACAAGCTTCAGAGTATGTTGCAGGTTGCGGTGCAATCGATTCAGTGGACTTACACCATCTTCTGGCAATTTTGTCCACAACAAGGGATTCTGAAGTGGGGTGAAGGATATTACAATGGAGTAATTAAGACTCGAAAGACGGTTCAAGCAGTTGAGGTTAGCATGGAAGAGGCGTCACTCCAAAGAAGCCAGCAACTGAAAGAGTTGTATGATTTGTTGTCTGCGGCAGAGACAAACCCTCCTCCGCCAAGTGCGGCTTCGTTGTCGCCGGAGGATCTAACGGACTCCGAATGGTACTATTTATTGTGTGTCACTTTCTCCTTTCATCCTGGTCAAGGATTGGCTGGAGCGGCATATGCCAGGAGGCAGCATTTATGGCTGACTGGTGCAAGCGAAGTGGATGGCAAGACATTTTTAAGAGCTCTTCTTGCCAAGACAGTGGTGTGCATTCCTCTATTGGATGGCGTCGTTGAGTTCGGCACAACGGATAAGGTCGAAGAAGACCTTGATTTGATCGAAACCCTAAAGAGATTCTTCATAGATGATTTTCATCCTTCAACGCCAAAGCTTGCTGCTCTTTCAGAACACTCAACCTCCACGAATTCTATTTCTTCACACTCTGCCATGGCCGCACCAAATATTCCCAAAGATGATAATAATAATAAAGAAGAAGCCAAATTAGGATCTGAATCAGAAACATTAATTCGTAATACTAACAGTACAAGTTTCCCAACAAATGAGATAATGGAACTGGAGGACTTCTGCTGGGTCGGATCACCCGATGATGGGTCGACCCGTATTTGGGGGCCGGTAGAGGACTCCTTGGTATTATGTTCAACCGGGTTGGAATTGTTTCAACAACACCAACCAGCTTCAGTACTCGTTTCCTCGGAAGACTTGGCACAAGGCGACAGTACCTTCTTCTCTCAAACGCCCTCCGTCGACCACCTCACCGATGCCTTCCAATCAGCTTTCTCCGACTGGATCACCGGCGCCGACAACCACCACATTGATGCGGAGGCTGACATCCTCACCTCCCAGTGGCTCCTCAAGTACATTCTATTCAGCGTCCCTTACTTACACGCCAAACACAAGTCCCTGCGTGGGAAGGCCACAATGCAACACTACGAGGCGAATGGCAGCCACGTACTAGCAGAGCGTCGCCGCCGTGAGAAGCTAAACGAGAGGTTCATCATTCTGAGGTCGTTGGTGCCGTTCGTGACCAAAACGGACAAGGCCTCCATATTAGGGGACACCATTGAGTACGTGAAGCAACTGAGCGATACGGTGCAGAGCCTCGAGGCGCGTAAGCGTCAGATGGAGGCTGATCAACGGCGGAGAATAAACAAGAAGAGGAGGGTGAGGGAGGTTGAGGTGGAGGTTTCAATCATAGGGAATGATGCACTATTGGAGGTTGAGTGCATGCATAGGGAAGGGTTGTTGGTGGATGTGATGAAAGTGCTGAGGGAGTTAGGGGTGGATGTGATGCTGGTGCAGTCTTCGGTGAATGATGATGGTGTGTTTGTGGCAGAGTTGAGAGCAAAGGTGAAGGAAAATGCAAATGGGAAGAAGGTTAGTATTGTGGAAGTGAAGAAGGCTCTATACCAGGTTATACCCTATCATCTTTGA 1647 0.4869 MATPPNNKLQSMLQVAVQSIQWTYTIFWQFCPQQGILKWGEGYYNGVIKTRKTVQAVEVSMEEASLQRSQQLKELYDLLSAAETNPPPPSAASLSPEDLTDSEWYYLLCVTFSFHPGQGLAGAAYARRQHLWLTGASEVDGKTFLRALLAKTVVCIPLLDGVVEFGTTDKVEEDLDLIETLKRFFIDDFHPSTPKLAALSEHSTSTNSISSHSAMAAPNIPKDDNNNKEEAKLGSESETLIRNTNSTSFPTNEIMELEDFCWVGSPDDGSTRIWGPVEDSLVLCSTGLELFQQHQPASVLVSSEDLAQGDSTFFSQTPSVDHLTDAFQSAFSDWITGADNHHIDAEADILTSQWLLKYILFSVPYLHAKHKSLRGKATMQHYEANGSHVLAERRRREKLNERFIILRSLVPFVTKTDKASILGDTIEYVKQLSDTVQSLEARKRQMEADQRRRINKKRRVREVEVEVSIIGNDALLEVECMHREGLLVDVMKVLRELGVDVMLVQSSVNDDGVFVAELRAKVKENANGKKVSIVEVKKALYQVIPYHL. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04229 548 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 387 450 IPR036638 GO:0046983
Seca2g04229 548 Gene3D - 378 450 IPR036638 GO:0046983
Seca2g04229 548 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 185 IPR025610 -
Seca2g04229 548 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 383 432 IPR011598 GO:0046983
Seca2g04229 548 Pfam Helix-loop-helix DNA-binding domain 387 432 IPR011598 GO:0046983
Seca2g04229 548 Coils Coil 429 449 - -
Seca2g04229 548 PANTHER TRANSCRIPTION FACTOR TT8 3 544 - -
Seca2g04229 548 SMART finulus 389 438 IPR011598 GO:0046983
Seca2g04229 548 MobiDBLite consensus disorder prediction 207 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04229 Seca-Chr2 126556395 126568594 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04229 327 544 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 50.000 6.27e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g04229 bHLH-MYC_N 1.1e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04229 - - aprc:113862120 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04830 2 134786795 134788920 Seca2g04229 2 126556395 126568594 PCT