Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04224 ATGGCTACGCCGCCAAATAACAACCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCGGTTCAATGGACTTACACCATCTTCTGGCAATTTTGTCCACAACAAGGGATTCTGAAATGGGGCGATGGATACTACAACGGAGCAATTAAGACTCGAAAGACGGTTCAAGCAGTTGAAGTTAGCATGGAAGAAGCTTCTCTCCAACGAAGCCAGCAACTGAAAGAGTTGTTTGAATCGTTGTCTGCGGCAGAGACAAACCCTCAAAGTCGGAGGCCAAGTGCTGCGTTGTCGCCGGAGGACCTAACGGAATCTGAATGGTTCTATTTGTTGTGTATCTCATTCTCCTTTCATCCTGGTGACGGGTTGGCTGGAGCAGCATATGCCAGGAGGCAGCATTTATGGCTCACCGGTGCAAACCAAGTGGACACCCAAACGTTTTCTAGAGCTATTCTTGCCAAGAGTGCAAATGTACAGACAGTGGTGTGCATTCCTCTATTGGAGGGCGTCGTTGAGTTCGGCACAACGGATAAGGTTGAAGAAGACCTTAATTTCATCCAACATGTAAAGGGCTTCTTCATGGATTACCATACTCCCACGCCAGAGCCTGCCCTATCAGAACACTCGGCCTCTAATCCCACATGTTCATTCCCTGCCATTGTCACAGCCAATATTTCAAATCAAGATGACATGAACGATGATAAACAAGAAGCCAAATTAGATTCCCAACCAGAAACAGTCCTTAACAGTTTTCCACCAAGCGAAGAACTATTGGAGCTGGACACGTTGGATGACTTCCGGGTCGGGTCACCCAGGGATGGTTCAAACCAGTTGGATTGGTATCCGGAACCGGAAGAGTCGACCCATGTGTGGGCCCCAGTGGAGGAGATGGCGCTGGGTTCAGCGACACAACAAGTACAACAACCAGCTTCAGTACTTCTCTCGGAAGACATGGCACAAGGCGACACCCACTACTCTCAAACGGTGTCCACCATCCTTCAAAACCACTCCTCCGCCTGGTGGTTAGACTCACCTTCCGTTCACCACGTCACCGATTCCTTCCAATCAGCTTTCACCGCGTGGATAACCGTTGCCGATGACCACCTTCATCACGCGGCAATGGACACCATCACCTCCCAGTGTGTCCTCAAGTACATTCTGTTCAGCGTCTCTCACTTGCACGCCAACCACAAGGGAACGCTGCAAAAATACTCCGCGAGTGGCAGCCACGTGCTTGCGGAGCGTCGGCGCCGCGAGAAGCTAAGCGAGAGGTTCATCATCCTGAAGTCGTTAGTGCCGTTTATGACTAAAACGGATAAAGCGTCCATATTAGGAGACGCCATTGAGTACGTGAAACAACTACGTGACAGAGTGCAGATCCTCGAGGCGCGTAAACGTCAGATGGAGGCATATCAACGGTGGAGATCAAATAAGAAGAGGAAGGTGAGGGAGGTTGAGGTGGAACTAGAAGTTTCCATCATTGAGAGTGATGTGTTGTTGGAGGTTGAGTGCATGCATAGGGAAGGGTTGTTGGTGGATGTGATGAAAGCGTTGAGGGAGTTAGGGGTGGTAGTGATGTTGGTGCAATCATCGGTGAAAGATGATGGAGTGTTTGTGGCAGAGTTGAGGGCTAAGGTGAAGGAAAATGAGAAGGGGAAGAAGGTTAGTATTGTGGAAGTGAAAAAGACACTTAACAAGATAATACCCGATCATCATCATCATCCATATTCGTTAGATGCTGATGGTTTGACGATGTGTGTGAATTTGGAGTGCATGCAGCATTTTCACGGGATGAGTAAGGAAGACAATAATGCTCATAATTCCGTGTCTGTTAGCATTGTTTCAAACAATAATGCCTACTCTCATATGATGTGA 1869 0.4842 MATPPNNNLQSMLQAAVQSVQWTYTIFWQFCPQQGILKWGDGYYNGAIKTRKTVQAVEVSMEEASLQRSQQLKELFESLSAAETNPQSRRPSAALSPEDLTESEWFYLLCISFSFHPGDGLAGAAYARRQHLWLTGANQVDTQTFSRAILAKSANVQTVVCIPLLEGVVEFGTTDKVEEDLNFIQHVKGFFMDYHTPTPEPALSEHSASNPTCSFPAIVTANISNQDDMNDDKQEAKLDSQPETVLNSFPPSEELLELDTLDDFRVGSPRDGSNQLDWYPEPEESTHVWAPVEEMALGSATQQVQQPASVLLSEDMAQGDTHYSQTVSTILQNHSSAWWLDSPSVHHVTDSFQSAFTAWITVADDHLHHAAMDTITSQCVLKYILFSVSHLHANHKGTLQKYSASGSHVLAERRRREKLSERFIILKSLVPFMTKTDKASILGDAIEYVKQLRDRVQILEARKRQMEAYQRWRSNKKRKVREVEVELEVSIIESDVLLEVECMHREGLLVDVMKALRELGVVVMLVQSSVKDDGVFVAELRAKVKENEKGKKVSIVEVKKTLNKIIPDHHHHPYSLDADGLTMCVNLECMQHFHGMSKEDNNAHNSVSVSIVSNNNAYSHMM. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04224 622 Coils Coil 449 469 - -
Seca2g04224 622 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Seca2g04224 622 MobiDBLite consensus disorder prediction 228 248 - -
Seca2g04224 622 Pfam Helix-loop-helix DNA-binding domain 407 453 IPR011598 GO:0046983
Seca2g04224 622 Gene3D - 403 479 IPR036638 GO:0046983
Seca2g04224 622 PANTHER TRANSCRIPTION FACTOR TT8 3 567 - -
Seca2g04224 622 SMART finulus 409 458 IPR011598 GO:0046983
Seca2g04224 622 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 403 452 IPR011598 GO:0046983
Seca2g04224 622 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 407 470 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04224 Seca-Chr2 126520161 126527415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04224 1 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 63.768 4.99e-94 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g04224 bHLH-MYC_N 1.6e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04224 - - aprc:113862120 682.945