Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04212 ATGCCAGCCATACAACGACATTCAAACAATGAAGAGAACAGTGTTTCTAAGGACCAAAGCTCTAAAACTCTAAAACAACGGAGAGAGGAAGAGAGGAAAGCAGCTGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTGGAAAACATTGCTCGGAAAAATGGCGTTAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGAGACCAAAAAGGCACTTACAAATGCTGGAGTGAATGTAGAGTCTGTGGAGGAACTTGCTAATGGTAAAGTTGATGGTTTGAAAAGGAGTAACCATGTGCTTTTAGTGAAGAACTTGCCCTATGGTTCTACAGAAAATGAACTTGCAAGGATGTTTGGGAAATTTGGTAGGTTGGATAAAATAATCCTTCCTCCAACAAAAACTTTGGCCCTGGTTGTATTCCTCGAATCAGCAGAAGCTAAAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGTTCCATTATACTTGGAGTGGGCTCCTTCGAATGTTCTTAGCCAAAGTACAACTTTGAAAAATAATGAAAAGAATAGTGGAATTGGTGAAAGTGATGCCAAGCGGCTGGTATTGGAGCAAAATGTGCAAAGAATATCAGATGTGGATATTGATCCAGACAGAGTAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAAGAGATGAGAGTTTGAAGAAACATTTTACTGAACACATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTAAGGGGTTTGGATTTGTTGAATTTGACTCCACGGAGACTGCTACAAATGTTTGCAGGGATTTACAGGGGACTGTTTTGGACGGGCATGCTCTTAATTTACAACTTTGTCATGTCAAGAATGATGGACAAGTACAAAAGACAGTTGAGAAGGATAAGAGTTCAACAAAATTGCTTGTAAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGATTAAAAGCTTAAGGTTGCCAGTGAAGTTTGGAAGGCATAGAGGCTTTGCTTTTATAGAGTTTGTTACTCAGCAGGAGGCACAAAATGCTCTTAAGGCACTTTCAAGCACCCACCTGTATGGGAGGCATCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGATGAACTGCGGGCTCGAACAGCTGCTCAATTTAGTGAACATAATGAATTTCAAAATGCTACTAGGTCATCCACGAAAAGGAAGATTGATACCTTAGATGAAGGAAATTAG 1377 0.4045 MPAIQRHSNNEENSVSKDQSSKTLKQRREEERKAAEASGDTRAWNSLFMRPDTVVENIARKNGVSKSDLLDREADDLAVRIALGETQVISETKKALTNAGVNVESVEELANGKVDGLKRSNHVLLVKNLPYGSTENELARMFGKFGRLDKIILPPTKTLALVVFLESAEAKAAFRGLAYKRYKDVPLYLEWAPSNVLSQSTTLKNNEKNSGIGESDAKRLVLEQNVQRISDVDIDPDRVEARSLFVKNLNFKTRDESLKKHFTEHMKEGRILSVKVKKHLKNGKNVSKGFGFVEFDSTETATNVCRDLQGTVLDGHALNLQLCHVKNDGQVQKTVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPVKFGRHRGFAFIEFVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLDELRARTAAQFSEHNEFQNATRSSTKRKIDTLDEGN. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04212 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 194 IPR000504 GO:0003723
Seca2g04212 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 318 IPR000504 GO:0003723
Seca2g04212 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 344 411 IPR000504 GO:0003723
Seca2g04212 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 183 IPR000504 GO:0003723
Seca2g04212 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 325 IPR000504 GO:0003723
Seca2g04212 458 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g04212 458 SUPERFAMILY RNA-binding domain, RBD 119 206 IPR035979 GO:0003676
Seca2g04212 458 Gene3D - 116 218 IPR012677 -
Seca2g04212 458 Gene3D - 333 446 IPR012677 -
Seca2g04212 458 MobiDBLite consensus disorder prediction 433 458 - -
Seca2g04212 458 Gene3D - 239 332 IPR012677 -
Seca2g04212 458 SMART rrm1_1 343 414 IPR000504 GO:0003723
Seca2g04212 458 SMART rrm1_1 243 321 IPR000504 GO:0003723
Seca2g04212 458 SMART rrm1_1 123 190 IPR000504 GO:0003723
Seca2g04212 458 MobiDBLite consensus disorder prediction 1 39 - -
Seca2g04212 458 SUPERFAMILY RNA-binding domain, RBD 337 420 IPR035979 GO:0003676
Seca2g04212 458 FunFam Multiple RNA-binding domain-containing protein 1 336 442 - -
Seca2g04212 458 CDD RRM4_RBM19_RRM3_MRD1 122 193 - -
Seca2g04212 458 CDD RRM5_RBM19_like 243 323 IPR034423 -
Seca2g04212 458 FunFam Nucleotide/nucleic acid binding protein 238 333 - -
Seca2g04212 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 418 IPR000504 GO:0003723
Seca2g04212 458 FunFam Multiple RNA-binding domain-containing protein 1 113 215 - -
Seca2g04212 458 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 332 418 - -
Seca2g04212 458 MobiDBLite consensus disorder prediction 442 458 - -
Seca2g04212 458 SUPERFAMILY RNA-binding domain, RBD 223 329 IPR035979 GO:0003676
Seca2g04212 458 CDD RRM6_RBM19_RRM5_MRD1 342 416 - -
Seca2g04212 458 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04212 Seca-Chr2 126398858 126407818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04212 216 442 Eukaryotic Initiation Factors Gene Family AT4G34110 27.869 1.05e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04212 K14787 - gmx:100796243 746.503