Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04190 ATGGCTACGATTGCTGCTCTCAGAAATTCTTCTTCTTCTTGCAGGCGTCTCTCCCTCTACCCCTTCTCCTCTCATCTCAACTCTTCCTTCTCCCGTTCCCCTCTCTCTCAACCTTCTTTTCCCAATGACACTTCCTCCTCCTCCTCCTCCTCTTATTCTTCCAACCCTTGGTGGAGATCCATGGCCACTTTCACCAGAACAAAACCTCACGTTAACGTCGGAACTATTGGACACGTGGATCACGGGAAGACCACACTCACTGCAGCAATCACCAAGGTGCTTGCGGATGAAGGGAAAGCCAAGGCTGTAGCCTTTGATGAAATCGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACAATTGCAACGGTTGGGGCACATGTTGAGTATGAGACCGCCAAAAGGCACTATGCACATGTTGACTGCCCTGGACATGCAGATTATGTTAAAAATATGATTACAGGAGCTGCCCAAATGGATGGTGGCATACTTGTTGTGTCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTAGATGATCCAGAGTTGTTAGAACTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGAAATTCCTATCATTAGAGGTTCAGCATTGTCTGCTTTACAGGGTACAAATGATGAGATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTGGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCCTAATGCCAATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAGCAAGGGGTTATCAAAATTGGTGATGAAGTTGAGGTTTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGACATACAACGTGGTCAGGTCATTGCTAAGCCTGGTTCTTGTAAAACATACAAGAAATTTGAGGCAGAGATTTATGTACTCACAAAGGATGAGGGTGGACGACACACTGCTTTCTTCTCTAACTACAAACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGGTAATGCCTGGAGACAACGTTACTGCCACATTTGAATTGATTTCTCCTGTTCCACTTGAAGCAGGGCAAAGATTTGCCTTGAGAGAGGGTGGCAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAA 1377 0.4524 MATIAALRNSSSSCRRLSLYPFSSHLNSSFSRSPLSQPSFPNDTSSSSSSSYSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATVGAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKIGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSCKTYKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGKVELPENVKMVMPGDNVTATFELISPVPLEAGQRFALREGGRTVGAGVVSKVLS. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04190 458 FunFam Elongation factor Tu 59 265 - -
Seca2g04190 458 Pfam Elongation factor Tu GTP binding domain 68 263 IPR000795 GO:0003924|GO:0005525
Seca2g04190 458 NCBIfam small GTP-binding protein domain 71 209 IPR005225 GO:0005525
Seca2g04190 458 Gene3D Translation factors 402 457 - -
Seca2g04190 458 Gene3D Translation factors 268 398 - -
Seca2g04190 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 288 IPR027417 -
Seca2g04190 458 NCBIfam elongation factor Tu 60 457 IPR004541 GO:0003746|GO:0005525|GO:0006414
Seca2g04190 458 CDD EF_Tu 69 265 IPR041709 -
Seca2g04190 458 CDD EFTU_II 273 361 IPR033720 -
Seca2g04190 458 SUPERFAMILY Translation proteins 267 362 IPR009000 -
Seca2g04190 458 CDD EFTU_III 364 453 - -
Seca2g04190 458 PRINTS GTP-binding elongation factor signature 72 85 IPR000795 GO:0003924|GO:0005525
Seca2g04190 458 PRINTS GTP-binding elongation factor signature 116 124 IPR000795 GO:0003924|GO:0005525
Seca2g04190 458 PRINTS GTP-binding elongation factor signature 191 200 IPR000795 GO:0003924|GO:0005525
Seca2g04190 458 PRINTS GTP-binding elongation factor signature 138 148 IPR000795 GO:0003924|GO:0005525
Seca2g04190 458 PRINTS GTP-binding elongation factor signature 154 165 IPR000795 GO:0003924|GO:0005525
Seca2g04190 458 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 367 457 IPR009001 -
Seca2g04190 458 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 68 266 IPR000795 GO:0003924|GO:0005525
Seca2g04190 458 PANTHER ELONGATION FACTOR TU-RELATED 63 457 - -
Seca2g04190 458 Hamap Elongation factor Tu [tuf]. 59 458 IPR004541 GO:0003746|GO:0005525|GO:0006414
Seca2g04190 458 Pfam Elongation factor Tu C-terminal domain 363 456 IPR004160 -
Seca2g04190 458 FunFam Elongation factor Tu 268 398 - -
Seca2g04190 458 Gene3D - 60 265 IPR027417 -
Seca2g04190 458 MobiDBLite consensus disorder prediction 30 55 - -
Seca2g04190 458 Pfam Elongation factor Tu domain 2 287 357 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04190 Seca-Chr2 126170580 126175043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04190 66 456 Eukaryotic Initiation Factors Gene Family AT5G60390 30.365 1.73e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04190 K02358 - gmx:100791600 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04190 2 126170580 126175043 Seca2g04190 2 126170580 126175043 ECH