Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04179 ATGCCCCTTCTCTTCTATCTCTTCATCTTCCTCTTCACTTTCCCTTCCCTCTCCACCGCCACATGTCCCCTCAACATCACCGTCCTCCGCGTCGTCGGCGGCGGCAACAGACCCTCTTTGGATTCCGGCACACAGTGCCATTACATCCTCCAAGCCCTTCATCTTCTCCAAGCTGATTACCTTCGCCGAAGTGGTCTCTTCGTTCCTCCTCTAAACTCCTCTGAGTCTTGCTGGAACACCTTCCAATCCTTCATCAATGAATTCGACCCAACCTTCGATGTTCGCTCCTCTTGTGGCCTTCAAACCTCTTGGATCTCTCAGGGTTGCATGAACATCACCACCAAACAACAATTCGAAAATCGTATTCCCAACTCAGCACTTCAACCCGTTCAAACAGATTGTAACCAATCCCTTGATAACAATGCCCCTTGTGCACTTTGCACCACTAAATTATCAAACTTGCTCAATTATTTGACTGGAACAACAATTGGGAATGTTTCTGATTGCAGGGATTATATCTCTATTTATGCTGCTTCTCTCTCTGATCCCACTGACGCAGGGAATGCTAAGTGCTTGTTTGGCCTTGATTTTTCCTCTTCAGGTTCTAGTGGTAAGCGTAGAAAGATTGTTATTGCGGTTGTTTCTGTTTTCTGTGCGTTGGCTTTGTTAATATTTGTTGGGGTTTGGGGTTACTTGAGATGGAAGAGAAAGAAGCTTGAAAGGGAAAAGGGTATTATTGGTAGAAGCACTGAGATGGATTTGGTTTCTGGGTTGGATTCAATGAACCAGAGTACCACTTTGATTAGGTTCACATTTGATGAAATTAAGAAGGCAACTAGGAATTTCTCTAGGGATAATATAATTGGGATGGGGGGTTATGGGAATGTTTATAAAGGGGTGCTTTTGGATGGAAGTCAAGTTGCATTGAAAAGGTTCAAGAATTGTTCTGTTGCTGGGGATGCAAGCTTCACTCATGAAGTTGAGGTTATTGCAAGTGTTAGGCATATCAACCTTGTTGCCCTCAGGGGTTATTGTACTGCTACCACTAATTTAGAAGGGCACCAGAGGATTATTGTTACTGATTTGATGGAAAATGGGAGTCTTTATGATCATTTATTTGGTTCTTCAAAGAAGAAACTAACTTGGCCAATTCGTCAAAAGATTGCTTTAGGCACAGCTAAGGGGTTGGCTTATTTGCATTATGGGGCTCAGCCTTCCATCATTCATAGGGATATTAAAGCTAGTAACATACTTTTGGATGACAAGTTTGAAGCTAAGGTAGCAGACTTTGGGTTAGCAAAGTTCAATCCTGAGGGAATGACACATATGAGCACTAGAGTAGCTGGTACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAGTTGACAGAGAGGAGTGATGTCTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACCAATGATGATGGTCAACCTTCTGCTCTCACTGATTTGGCTTGGTCATTGGTTAGAAATGGTAGAGCTTTGGATGTTGTAGAAGATGGTATGCCAGAAACTGGTCCACCAGAGGTTCTTGAGAAGTATGTGTTGGTTGCTGTACTATGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAAGTTGTTAAGATGCTGGAGACAGATGAATCAGTACCCTCAATACTGGAAAGGCCAATTCCTTTTATTGCTGGGAGACTTGATATTGAGAAATCTGCCAGTAACTCTGGTCAGCTATGCAGTCCAACAGGTTATCAAGCATATGCATTACAAGTCGTTCCATGTCCACTCAACATCACCGTCCTCCGCTCCACACCCTCCTTGGACACCGCCACCCGCTGTCACTACATCCTCCAATCCCTTCGTATTCTCCAATCCGATTACCTCCGCCGCACCGGATTCTTCCTACCTCCATCCAACTCTTCCTTCTCTTGCTGGAACACTCTCCAATCTTTCATCAACCAATACGACATTCGCTCCTCCTGTGACCTCCCTTCCTCTTCCATCTCCCAAGGCTGCATGAACATCACCACCTTACAACAATTCCAATCACTTGCTCCTGCCACCGACCTTCAACAAGTGCACTCAAATTGTAACCAATCTCTTGCTACTAATGCGCCCTGTGCACTCTGTACCACCACCTTGTCCAGGTTGGCGTTCTACTTCACAGGACCTTCCGCTGGGAAAATCGCTGATTGTAAGGCTATTGCCTCTATTTATGCAGCTTCTTTATCCGATCATTACGACCAAACTGCTCAATGCTTGTTCGGCCTCGAATTTTCCTCTTCCGGTAAGAAACCAAAGAAGATTGTTGTTATTGTGCTTGTTTCTGTTTTTAGCGTTTTAGGTTTGTTAGTATTTGCTGGGGTTTGGGTTTACTTCAAATTCAACCGGAAGAAGAAGAAGAAGGGTGTTGGTAGTAGTAGTAGTACTGATATGGGTTTGGATTTGATGAACCAGAGAACTACTTTAATTAGGTTCACATTGGATGAGATTAAGAGGGCAACTAGGAATTTCTCTGGCCAAAATATAATTGGGAGTGGAGGTTATGGGAATGTATTTAAAGGGGTGATGCCTGATGGAAGCCAAGTTGCATTGAAAAGGTTCAAGAATTGTTCTGTTGCTGGGGATGCAAGTTTCACTCATGAAGTTGAGGTTATTGCAAGTGTTAGGCATGTTAACCTTGTTGCCCTAAGAGGCTATTGTACTGCCACCACTAATTTAGAAGGGCACCAGAGGATTATTGTTACTGATTTGATGGAAAATGGGAGTCTTTATGATCATTTATTTGGTTCTTCAAAGAACAAACTAACTTGGCCAATTCGTCAAAGGATTGCTTTAGGCACAGCTAAAGGATTGGCTTATTTGCATTATGGGGCTCACCCTTCCATCATTCATAGGGATATTAAAGCTAGTAACATACTCTTGGATTACAAGTTTGAAGCTAAGGTAGCGGACTTTGGGTTAGCAAAGTTCAATCCTGAGGGAATGACACATATGAGCACTAGAGTAGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGGCAGTTGACAGAGAGGAGTGATGTCTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACCAATGATGATGGCCAACCTTCTGCTCTCACTGACTTGGCTTGGTCATTGGTTAGAAATGGTAGAGCTTTGGATGTTATAGAAGATGATATGCCAGAACCTGGTCCAACAGAGGTTCTTGAGAAGTATGTGTTGGTTGCTGTGCTATGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAAGTTGTTAAAATGTTGGAGACAGATGAATCAGTACCCTCAACAATGGAACAGCCAATCTCATTCTCATCTATTGTTGATATTGAGAAATCTTTCTCAAGTGATAACTAG 3462 0.431 MPLLFYLFIFLFTFPSLSTATCPLNITVLRVVGGGNRPSLDSGTQCHYILQALHLLQADYLRRSGLFVPPLNSSESCWNTFQSFINEFDPTFDVRSSCGLQTSWISQGCMNITTKQQFENRIPNSALQPVQTDCNQSLDNNAPCALCTTKLSNLLNYLTGTTIGNVSDCRDYISIYAASLSDPTDAGNAKCLFGLDFSSSGSSGKRRKIVIAVVSVFCALALLIFVGVWGYLRWKRKKLEREKGIIGRSTEMDLVSGLDSMNQSTTLIRFTFDEIKKATRNFSRDNIIGMGGYGNVYKGVLLDGSQVALKRFKNCSVAGDASFTHEVEVIASVRHINLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKKLTWPIRQKIALGTAKGLAYLHYGAQPSIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQTNDDGQPSALTDLAWSLVRNGRALDVVEDGMPETGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSILERPIPFIAGRLDIEKSASNSGQLCSPTGYQAYALQVVPCPLNITVLRSTPSLDTATRCHYILQSLRILQSDYLRRTGFFLPPSNSSFSCWNTLQSFINQYDIRSSCDLPSSSISQGCMNITTLQQFQSLAPATDLQQVHSNCNQSLATNAPCALCTTTLSRLAFYFTGPSAGKIADCKAIASIYAASLSDHYDQTAQCLFGLEFSSSGKKPKKIVVIVLVSVFSVLGLLVFAGVWVYFKFNRKKKKKGVGSSSSTDMGLDLMNQRTTLIRFTLDEIKRATRNFSGQNIIGSGGYGNVFKGVMPDGSQVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKNKLTWPIRQRIALGTAKGLAYLHYGAHPSIIHRDIKASNILLDYKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQTNDDGQPSALTDLAWSLVRNGRALDVIEDDMPEPGPTEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSTMEQPISFSSIVDIEKSFSSDN. 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04179 1153 ProSiteProfiles Protein kinase domain profile. 282 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04179 1153 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 246 361 - -
Seca2g04179 1153 SUPERFAMILY Protein kinase-like (PK-like) 264 567 IPR011009 -
Seca2g04179 1153 Pfam Protein tyrosine and serine/threonine kinase 285 556 IPR001245 GO:0004672|GO:0006468
Seca2g04179 1153 Pfam Protein tyrosine and serine/threonine kinase 853 1123 IPR001245 GO:0004672|GO:0006468
Seca2g04179 1153 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 645 1139 - -
Seca2g04179 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 974 986 IPR008271 GO:0004672|GO:0006468
Seca2g04179 1153 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 930 1131 - -
Seca2g04179 1153 Gene3D Transferase(Phosphotransferase) domain 1 363 565 - -
Seca2g04179 1153 Gene3D Transferase(Phosphotransferase) domain 1 930 1139 - -
Seca2g04179 1153 Gene3D Phosphorylase Kinase; domain 1 248 361 - -
Seca2g04179 1153 Gene3D Phosphorylase Kinase; domain 1 810 928 - -
Seca2g04179 1153 CDD STKc_IRAK 855 1124 - -
Seca2g04179 1153 SMART serkin_6 282 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04179 1153 SMART serkin_6 849 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04179 1153 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Seca2g04179 1153 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 363 564 - -
Seca2g04179 1153 SUPERFAMILY Protein kinase-like (PK-like) 832 1142 IPR011009 -
Seca2g04179 1153 CDD STKc_IRAK 288 557 - -
Seca2g04179 1153 ProSitePatterns Protein kinases ATP-binding region signature. 855 877 IPR017441 GO:0005524
Seca2g04179 1153 ProSiteProfiles Protein kinase domain profile. 849 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04179 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Seca2g04179 1153 Pfam SPARK 604 735 IPR043891 -
Seca2g04179 1153 Pfam SPARK 18 169 IPR043891 -
Seca2g04179 1153 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 809 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04179 Seca-Chr2 126002188 126011587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04179 1 600 Receptor kinase-like Gene Family AT2G48010 62.520 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca2g04179 PK_Tyr_Ser-Thr 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04179 - - gmx:100819453 971.074