Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04178 ATGATATATTTCCTGCCTCATAAAGTTTCTTACTTTTGTGGTGGATTTGTAAATTTTTTATCTTTAGTAGAGGATTCTGGAATTTTGGGTTTGTGGGTCTCAAAAATGAAGGACAAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATTTCAAGAGCTCAGAGTCAGAAACAAGTTCTTCTAAAGAACCAACTTTTGATTCTGAGTCTCAAGATAAGTACTCAAAACCTGGTTCTAGATGGCATGCATTTCTCCAATTGTTGAAGACCAAATCAAAGAAGCCTATATCCACATTGCATCCTCTTAGTGTCCTCAAGCTCTCAAGAAGAATGAGCAGTAGCATGAAGGAGACTATTCTTCCAAGTTGTAGCATAGATGCAGATTCTTCCTTGCAAAAGTCACCATGGAGGATCTTTACCCAACATGAGATACAAATTGCAACCAATTATTTCAGCCAAGAAAATTTGATTGGGAAAGGTGGTTATGCTGATGTTTACAAAGGGTGTTTACCAAATCATCAACTAGTAGCAATTAAAAGGCTAACAAGAGGAACAACAGATGAAACCATAGGGGATTTCTTATCAGAACTTGGCATAATGGCTCATGTAAATCACCCCAATACAGCTAAGTTGGTTGGTTATGGGGTGGAAGGAGGAATGTATCTAGTGCTTGAATTGTCTGAAAAAGGAAGCTTAGCTTCAGTGCTTTATGGTAGTTCCAAGGAGAAATTACCATGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTGAAGGTATTTTATATCTTCATGAAGGTTGCCCAAGAAGAATTATCCATAGAGATATAAAAGCTGCAAATATCTTGCTAACTGAGGACTTTGAGCCACAGATTTGTGATTTCGGACTAGCAAAATGGCTACCAGAGAATTGGACTCACCACAGTGTTTCAAAATTTGAAGGAACTTTTGGATACCTTGCTCCTGAATACTTGCTTCATGGGATAGTAGACGAGAAAACAGATGTATTTGCCTTTGGGGTGTTGCTATTAGAATTAGTCACGGGGCGGCGAGCACTTGATTATTCACAACAAAGTCTTGTTTTATGGGCAAAACCTTTGCTGAAGAAGAATTATATTAGGGAGCTGATTGATCCTTCACTAGCCGATGACTTTGACTGTCGGCAGATTAATATTATGCTCTTGGCAGCTTCATTATGCATTCAACAATCCTCTATTCGTCGTCCACCTATCAGACAGGTTGTACAGCTTCTGAATGGTAACCTTAGCTGCTTTAAGTACACGAAGAAATCTCGACTTCCATTTTTCGGAAAAATCTTTGAAGAAGAGGTCCTTGATTCTGATTGA 1344 0.3891 MIYFLPHKVSYFCGGFVNFLSLVEDSGILGLWVSKMKDKVDSPVGVLEDYFKSSESETSSSKEPTFDSESQDKYSKPGSRWHAFLQLLKTKSKKPISTLHPLSVLKLSRRMSSSMKETILPSCSIDADSSLQKSPWRIFTQHEIQIATNYFSQENLIGKGGYADVYKGCLPNHQLVAIKRLTRGTTDETIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMYLVLELSEKGSLASVLYGSSKEKLPWSIRQKIALGTAEGILYLHEGCPRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHSVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVTGRRALDYSQQSLVLWAKPLLKKNYIRELIDPSLADDFDCRQINIMLLAASLCIQQSSIRRPPIRQVVQLLNGNLSCFKYTKKSRLPFFGKIFEEEVLDSD. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04178 447 SMART serkin_6 151 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04178 447 Gene3D Phosphorylase Kinase; domain 1 122 225 - -
Seca2g04178 447 Gene3D Transferase(Phosphotransferase) domain 1 228 431 - -
Seca2g04178 447 ProSitePatterns Protein kinases ATP-binding region signature. 157 179 IPR017441 GO:0005524
Seca2g04178 447 Pfam Protein kinase domain 152 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04178 447 MobiDBLite consensus disorder prediction 56 76 - -
Seca2g04178 447 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 228 431 - -
Seca2g04178 447 ProSiteProfiles Protein kinase domain profile. 151 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04178 447 SUPERFAMILY Protein kinase-like (PK-like) 135 421 IPR011009 -
Seca2g04178 447 PANTHER OS08G0249100 PROTEIN 39 431 IPR046958 -
Seca2g04178 447 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 122 225 - -
Seca2g04178 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04178 Seca-Chr2 125981343 125985310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04178 139 420 Receptor kinase-like Gene Family AT1G34210 41.581 1.84e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca2g04178 Pkinase 7.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04178 - - gmx:100802873 687.952