Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04150 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGTAGTGGTCCACCTGCAAACCAATACACTGCACCACCTAGAGGGGGTAGCACATACGGTGGAGGTGGAGGAAATATAGGCCCTGATAGAGGAGAGCCAAGGGGCAATGTTGCTAAGAGTGGTGCTCCACAGAAAGTTTTACCAATTGAGATACCCTCTATGCCATTGGATGAGATAAATAGGTTAACAGGAAACTTTGGTTCAAAGGCTTTTATAGGTGAAGGTTCCTATGGAAGGGTTTTCTATGCAAAATTGAGTGATGGAACTGAAGCTGCAATTAAGAAGCTTGATACCAGCTCTTCACAAGAACCTGACACTGATTTTGCAGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATGATCATTTTGTGGAGTTGATTGGATATTGCTTAGAGGCAGATAACAAAATATTGGTTTATCAATATGCAAGTTTGGGTTCATTGCATGACATATTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCAGGTCCAGTTTTAAGCTGGAACCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTAGAGTTTCTTCATGAAAAGGTTCAACCTTCTATAGTTCATCGTGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCTGATACAGCAGCTCGGTTACATTCAACAAGAGTCTTGGGAACATTTGGCTACCATGCTCCAGAGTATGCTATGACAGGGCAAATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTACCCGCCAAAGGCTATTGCTAAGTTGGCAGCTGTTGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCAGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCAAAACCGGCTGGTCCTGACCCTAATGCTTGA 1110 0.4333 MLCCGGAEEESSGPPANQYTAPPRGGSTYGGGGGNIGPDRGEPRGNVAKSGAPQKVLPIEIPSMPLDEINRLTGNFGSKAFIGEGSYGRVFYAKLSDGTEAAIKKLDTSSSQEPDTDFAAQLSVVSRLKHDHFVELIGYCLEADNKILVYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPAGPDPNA. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04150 369 FunFam probable protein kinase At2g41970 49 152 - -
Seca2g04150 369 SUPERFAMILY Protein kinase-like (PK-like) 55 354 IPR011009 -
Seca2g04150 369 MobiDBLite consensus disorder prediction 1 51 - -
Seca2g04150 369 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Seca2g04150 369 Pfam Protein tyrosine and serine/threonine kinase 81 354 IPR001245 GO:0004672|GO:0006468
Seca2g04150 369 ProSitePatterns Tyrosine protein kinases specific active-site signature. 204 216 IPR008266 GO:0004672|GO:0006468
Seca2g04150 369 ProSiteProfiles Protein kinase domain profile. 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04150 369 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Seca2g04150 369 FunFam PTI1-like tyrosine-protein kinase 3 154 363 - -
Seca2g04150 369 SMART tyrkin_6 76 354 IPR020635 GO:0004713|GO:0006468
Seca2g04150 369 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 23 362 - -
Seca2g04150 369 Gene3D Transferase(Phosphotransferase) domain 1 154 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04150 Seca-Chr2 125023817 125027360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04150 40 361 Receptor kinase-like Gene Family AT3G58690 43.252 2.07e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca2g04150 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04150 - - gmx:100786291 673.7