Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04143 ATGGAACTTGCTTTGAGCTTAGGTGATGCATCAAAGCCTTTCTCATTACTTGACAAAAACAACCCCACAAAATTACCACCCAACAAAGACCCACTCGGTTTCTGCATAGCTAGAAATTCCTCAGAGGAAAGAAGAGGTTCCTCAGATCCACCCATTCAGCTTGACCTTCTTCCTTCAACACCAGTCCTTCGTTCACAACCTTCTTCACACCTTCGAATTCCATGGCTCAATGATGCACTGGGTATAGAACGTGTGACATCAGAACCACCGACGAGAGGAGCATTCGATGTGAACCGATTCCCGTTGCCGGCGGCGGAGGACACCGACGACGGCGCTGCAATTTCATCCCCAAACAGTGCGGTTTCATCTTTTCAGATGGATTTCAGCAGAAAACACGATAATGAAAGAGTTAGCGATGATGAAGAAAATGAAAACGGTTCAACTCGGAAGAAACTCAGACTCTCTAAAGAACAATCAGCTTTTCTAGAAGAAAGCTTCAAAGAACACACCACTCTTAATCCCAAGCAGAAACTTGCTCTTGCTAAACAGTTAAATCTCCGTCCTCGTCAAGTTGAAGTTTGGTTTCAGAATAGAAGGGCAAGGTAA 606 0.4472 MELALSLGDASKPFSLLDKNNPTKLPPNKDPLGFCIARNSSEERRGSSDPPIQLDLLPSTPVLRSQPSSHLRIPWLNDALGIERVTSEPPTRGAFDVNRFPLPAAEDTDDGAAISSPNSAVSSFQMDFSRKHDNERVSDDEENENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04143 201 MobiDBLite consensus disorder prediction 1 69 - -
Seca2g04143 201 MobiDBLite consensus disorder prediction 87 154 - -
Seca2g04143 201 CDD homeodomain 149 201 IPR001356 GO:0003677
Seca2g04143 201 SMART HOX_1 147 201 IPR001356 GO:0003677
Seca2g04143 201 MobiDBLite consensus disorder prediction 112 127 - -
Seca2g04143 201 Gene3D - 154 201 - -
Seca2g04143 201 ProSiteProfiles 'Homeobox' domain profile. 145 201 IPR001356 GO:0003677
Seca2g04143 201 FunFam Homeobox-leucine zipper protein HAT22 153 199 - -
Seca2g04143 201 Pfam HD-ZIP protein N terminus 32 124 IPR006712 GO:0005634
Seca2g04143 201 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 41 201 - -
Seca2g04143 201 Pfam Homeodomain 149 201 IPR001356 GO:0003677
Seca2g04143 201 MobiDBLite consensus disorder prediction 128 154 - -
Seca2g04143 201 SUPERFAMILY Homeodomain-like 139 201 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04143 Seca-Chr2 124871870 124873379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04143 1 201 Homeobox Transcription Factor Family AT5G06710 40.672 1.31e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca2g04143 HD-ZIP_N 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04143 K09338 - gmx:100810885 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04143 2 124871870 124873379 Seca2g04143 2 124871870 124873379 ECH
Seca8g04972 8 137941370 137943146 Seca2g04143 2 124871870 124873379 PCT