Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04142 ATGGGGGAAGAGAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCGGAGCCGGCTACTGGGTCCATAACCAATGAAGCTGTGAACTTGGACGATTGGATTGGGGACCCTCTTAACAGAATTAGCGAAGCTGTGAGGCTTAGGGCGCGACATAGGTGGAGATGGAGGCATCTACCTATCCCTCCTCCTGAACTTCATGTTCACATTCCATCTGAAGCTGCAAGACATTTTTATATCCCACCTCAATCCCCAAATATGCCGGTGGAATTGGAAAGTTTTTTGGTCAATTCTGGTAATGCAAGCGCGTTACAGGCTGGGGAAGGAAGTGTGGCGGCTGAGGAGAGACCGGAGGAGGAGGCGCCGAAAGCATGTGAGATCAACAATGGTGTTACTGAGGATGAGACATCACAGAAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGATGGAGACTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCTTATATAGATGGTTGCATCTGCATTCGGATGCTAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGGCTCTTAAGAGTGTTACCCCAATATATGGCCGCGGAAACAATGCTCGTGGTCCTGAGGAGGATTCCAGTCTTAAGATCCCTCCTAGGCCCCAAGCAAGGCGTGTTGAGAGCCTGAGACAAACTATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATTTTACTCGGGATTTAGTTCAGCCGCGTGAACAAGACAATGGTCGCGAACCAGCAGAGACAACTAGTTCTGTAATAAGTAGGTTTTTGACATCTCGAGGCATGAGGAGAGAGCAGAATCTTGTGGCACCCCCTCAAGATGATGTAGTGGTTTTACCACAGAACAATGTTGGTAGTGCTGAGGTAGGGGGTGATAACCGGAGGGTGCAATCCCTATTGCTTCGAAGAACACAATCACATAGAGCAACACTTTCTACTCTTTCATCTGCACTGACTTCTGCTGAAAGGTTAGTTGAGGCATATGTCCGTAGCAATCCATTAGGTAGAAACCAAGAACAACCTCCTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAACTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCCTCTAGGAGGAGAAACGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTATCAACTGA 1335 0.4712 MGEENSDAMNLDLNLGPGPEPATGSITNEAVNLDDWIGDPLNRISEAVRLRARHRWRWRHLPIPPPELHVHIPSEAARHFYIPPQSPNMPVELESFLVNSGNASALQAGEGSVAAEERPEEEAPKACEINNGVTEDETSQKKKDDVEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVALKSVTPIYGRGNNARGPEEDSSLKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDFTRDLVQPREQDNGREPAETTSSVISRFLTSRGMRREQNLVAPPQDDVVVLPQNNVGSAEVGGDNRRVQSLLLRRTQSHRATLSTLSSALTSAERLVEAYVRSNPLGRNQEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRIN. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04142 444 Pfam Zinc finger, C3HC4 type (RING finger) 159 199 - -
Seca2g04142 444 SUPERFAMILY RING/U-box 154 212 - -
Seca2g04142 444 ProSitePatterns Zinc finger RING-type signature. 174 183 IPR017907 -
Seca2g04142 444 SMART ring_2 159 199 IPR001841 -
Seca2g04142 444 MobiDBLite consensus disorder prediction 369 388 - -
Seca2g04142 444 MobiDBLite consensus disorder prediction 422 444 - -
Seca2g04142 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 248 IPR013083 -
Seca2g04142 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 130 305 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca2g04142 444 MobiDBLite consensus disorder prediction 135 149 - -
Seca2g04142 444 CDD RING-HC_AtRMA-like 157 200 - -
Seca2g04142 444 MobiDBLite consensus disorder prediction 412 444 - -
Seca2g04142 444 FunFam E3 ubiquitin-protein ligase RMA3 126 248 - -
Seca2g04142 444 ProSiteProfiles Zinc finger RING-type profile. 159 200 IPR001841 -
Seca2g04142 444 MobiDBLite consensus disorder prediction 108 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04142 Seca-Chr2 124844108 124845442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04142 1 435 C3H Transcription Factor Family AT3G58030 53.392 4.65e-136 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04142 K10666 - gmx:100811099 694.115