Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04122 ATGAATGAGAACACGGTTGATTACCTTGGAGTGATTCAAGTTCAACATAGTCATGAACTAAATGGAGATTTTAATTCTGAGCTTGGAAATCGTTCTTGTCAATATTTTGATACCAGACAAGCTTGGAATATGGGGTCATACATTCAACCACATGCCATGGCTGGAGGAGGAGCAGAACAGTTACCAAACATAGACTCTGGCAAATCATCTAACACTATTATGCAAAATTTTGAGTCACCAGCTTCTGCCTTTTATGCAGCAGAACACTGCATGGGATTCTCAGAATATGATTGCCAAGTTGGTAATAATCACTCATTGAGTTCTCAATTATATAAGATTAATGATTTGGAATTCCCTTTGTATCAATCTCCCAAGGAAACCCTTTTCTTGGATTTAGCAAACCAACCTGACCCCAACTTTGAATTTTCAAACACTTTGCAAGCAGTGGTGAAGTCTCAATTGAATAGTAATCAATGTCATAGATCCCCAGAAAAATCCAATAAAATTTCATTTGGGATTGGAAATTTTCCAGGTACTAAGTTCCTTTCAATTGAACAACAAGAGTTGTTAATTGATGGTATTGCCTCAGTTAGAAGGAGCTCATCAATTCCTAACAAAGGAAATCAGGATTATACTGTTGCTTGTGGATCTTATAATTTACCTTTTGCACATCTAAGCTTCTCTTCTCAGCATGAGAAGTTGTCTCCAAAATTTTCAGCAGGAAATTCTGCTTCTAATGGAACAGTAATCTCAAGTAAAACACGTATAAGATGGACTAATGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGGGGTGTTGAGAAGGCAACACCAAAAGCTATATTGAAGATGATGGACTCAGATGGTTTGACCATCTTTCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCCAAGTTCATGCCAGATCCAGCTCAAGGTAATTTCATTTTTACTAAACCTAAAAAGTGTCCTGTTTCAGGGAAATCTGACAAAAGGATCCATACAGAGGATGTGCAGCCTCTTGGTGTCAAAACTGGCTTACAAATTAGAGAGGCACTTCAGCTGCAATTAGATGCTCAAAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAACATTGCAGTTGAGAATTGAGGAACAAGGCAGGCAGCTGAAAAAAATGTTTGACCAGCAGCAGAGGACAAGTCATAACCTCTTGACAGCCAATGATGATACAACAATTAGTCATAAATCTGTTGAGGTTTCTATTTCTGAAGGGGCTGGAAATTCCTTCTTCCCTTCATAG 1296 0.3819 MNENTVDYLGVIQVQHSHELNGDFNSELGNRSCQYFDTRQAWNMGSYIQPHAMAGGGAEQLPNIDSGKSSNTIMQNFESPASAFYAAEHCMGFSEYDCQVGNNHSLSSQLYKINDLEFPLYQSPKETLFLDLANQPDPNFEFSNTLQAVVKSQLNSNQCHRSPEKSNKISFGIGNFPGTKFLSIEQQELLIDGIASVRRSSSIPNKGNQDYTVACGSYNLPFAHLSFSSQHEKLSPKFSAGNSASNGTVISSKTRIRWTNDLHEKFVECVNRLGGVEKATPKAILKMMDSDGLTIFHVKSHLQKYRIAKFMPDPAQGNFIFTKPKKCPVSGKSDKRIHTEDVQPLGVKTGLQIREALQLQLDAQRRLHEQLEIQRTLQLRIEEQGRQLKKMFDQQQRTSHNLLTANDDTTISHKSVEVSISEGAGNSFFPS. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04122 431 SUPERFAMILY Homeodomain-like 251 307 IPR009057 -
Seca2g04122 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 250 310 IPR017930 -
Seca2g04122 431 Gene3D - 252 311 - -
Seca2g04122 431 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 246 409 IPR044848 GO:0003700
Seca2g04122 431 Pfam Myb-like DNA-binding domain 257 306 IPR001005 -
Seca2g04122 431 Coils Coil 354 374 - -
Seca2g04122 431 FunFam Myb family transcription factor 252 310 - -
Seca2g04122 431 NCBIfam myb-like DNA-binding domain, SHAQKYF class 253 308 IPR006447 GO:0003677
Seca2g04122 431 Pfam MYB-CC type transfactor, LHEQLE motif 351 397 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04122 Seca-Chr2 124521510 124525467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04122 204 401 G2-like Transcription Factor Family AT3G04450 45.226 3.89e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca2g04122 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04122 - - ccaj:109797364 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04122 2 124521510 124525467 Seca2g04122 2 124521510 124525467 ECH