Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04118 ATGATCGACTTCCGAAAACTCAGATTAACATTCACATTCTCCAATGTTGCCCAAAACCACCTCAGGCTTAAACCCCAACAAAACCCTAGATTTCAGAGCACGAAAAGAGAACTTGAATTGAAGGTTTTCGAAGAAGAGAAACCTCTTCGGAAATCCATCATAAAAGAAGCCCAAGCTGCATTGCTGGAATATCTGCATTCAACGAGGAGCTTGCAGTTTTTGGACGCAGACAACATGTGCAAAAACTCGCCTTTTTTCCTTCACGACCTTGTGAAGAAAACCCAACAGAACGAAGGAGGCACGGCCACAAAGCGATCCTTTTCACGCTACCTTCGTTACCACCCCATCAACGAGTTCGAACCCTTCTTCGAGAGCTTGGGTTTGAAGCCTTCCGAATACGCAACCTTTCTTCCACGTGACATGATTTTTCTCACCGATGATCCTTTATTGATGGGGAATTATCACACTCTATGTAACTATGGGGTTCCCCGCTTCAAAATGGGGAACATTTTCAAGCTAGCACCCCAAGTGTTTCGTTACGAACATGGGGTTTTGAGCTCAAAGCTTAAGGCTTATGAAAACCTGGGTGTTGCACCTTCCACTTTGGTGGATGTTGTTGCTGTTAGTCCCTACCTTTTGGTTGGAGATGTTAACCTTGATTTTGTCAAGGTTGTGGAAAAGTTGAAGCCTTTTGTTGCAAAGGGTGGTGGTGGTTGTTTGATTGAGGAGCATTTGGTTGATGGGGGTTCTTGTAATTGGGGCATGATGCTTCAGCTCTTGTGCTTGCTTTCCAAGGTTGGTCTCAGTGAGGAACAGTTGGTTGACATCATTTGCAACTGCCCTTGTGTTGTTTTTGAGGAGTCAGGAGGTAGGACACTGTCCCTGATTGCCTTCTTGATCAAATTTGGATTGTCTGTGAATCAGATTGTTCTCATGTTTCTTGAGTTTCCGCAGATTCAGATTGGCAAGTTTTTCGCCAACTTGAGGCAGTGTTTGCTGTTCCTGAGTGAAATTGATATGCAGGCTGCAGTGATTGGAAGGATTTTCCAATCTCACTCCTTGCTGCTGGGTTCCTTCACTCTGAAGAAAAAAAATAGTTTGCTTCTTAGCTTAAAAGGTGGCAAGAAGCGAGTCTGTAGAATCGTGCAGGATAATCCTCAAGTATTGAAGAATTGGGCTCTGGGGAGAAAAGTCCAGCCTTTGGAGAGCTTAAATGAAGAGGAGGAATCAAAGGCACTGAAGACAAAGTTCATACTGAGCTTGGGATATGTGGAAAACTCAGAAAAAATGAAATGGGCATTTAAGGTGTTCAGAGGTAAAGGAGCTGAGCTTCAGGAGAGATTTGATTTTATTGTTAAAGCTGGCTTGGATTGTAAGGATGTTCGTAAAATGATTAAAGTTTCCCCTCAGATTCTTAATCAGACCACAAATAGGATCAACATGAAAATTGAGTATCTTTTAAATGAAGGATATCCTATAACAGATTTAGTGAGTTTCCCATCTTTTCTTTCCTATACACCTCAAAGAGTTAAGCTTAGGTTATCAATGTATAACTGGCTCAAAGACCATGGAGCTGCAGATCCTGGCCTTGCTTTGAGCACTACAATTGCATGCTCAGAGAAAATATTTATACAGCAGTATGTAAAACGTCATCCATCTGGCATTCAAGTTTGGCAGAATTTAAAGAAAGAAATTTGTTCTGAGGATTAA 1710 0.4199 MIDFRKLRLTFTFSNVAQNHLRLKPQQNPRFQSTKRELELKVFEEEKPLRKSIIKEAQAALLEYLHSTRSLQFLDADNMCKNSPFFLHDLVKKTQQNEGGTATKRSFSRYLRYHPINEFEPFFESLGLKPSEYATFLPRDMIFLTDDPLLMGNYHTLCNYGVPRFKMGNIFKLAPQVFRYEHGVLSSKLKAYENLGVAPSTLVDVVAVSPYLLVGDVNLDFVKVVEKLKPFVAKGGGGCLIEEHLVDGGSCNWGMMLQLLCLLSKVGLSEEQLVDIICNCPCVVFEESGGRTLSLIAFLIKFGLSVNQIVLMFLEFPQIQIGKFFANLRQCLLFLSEIDMQAAVIGRIFQSHSLLLGSFTLKKKNSLLLSLKGGKKRVCRIVQDNPQVLKNWALGRKVQPLESLNEEEESKALKTKFILSLGYVENSEKMKWAFKVFRGKGAELQERFDFIVKAGLDCKDVRKMIKVSPQILNQTTNRINMKIEYLLNEGYPITDLVSFPSFLSYTPQRVKLRLSMYNWLKDHGAADPGLALSTTIACSEKIFIQQYVKRHPSGIQVWQNLKKEICSED. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04118 569 Gene3D Transcription termination factor 3, mitochondrial 82 288 IPR038538 -
Seca2g04118 569 PANTHER CGI-12 PROTEIN-RELATED 258 551 IPR003690 GO:0003690|GO:0006355
Seca2g04118 569 SMART mt_12 493 526 IPR003690 GO:0003690|GO:0006355
Seca2g04118 569 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Seca2g04118 569 SMART mt_12 168 198 IPR003690 GO:0003690|GO:0006355
Seca2g04118 569 SMART mt_12 462 492 IPR003690 GO:0003690|GO:0006355
Seca2g04118 569 Gene3D Transcription termination factor 3, mitochondrial 291 563 IPR038538 -
Seca2g04118 569 FunFam Transcription termination factor MTEF18, mitochondrial 295 561 - -
Seca2g04118 569 Pfam mTERF 261 398 IPR003690 GO:0003690|GO:0006355
Seca2g04118 569 Pfam mTERF 443 543 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04118 Seca-Chr2 124473846 124475555 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca2g04118 mTERF 7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04118 - - lja:Lj1g3v4317450.1 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04118 2 124473846 124475555 Seca2g04118 2 124473846 124475555 ECH