Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04116 ATGGCTTCAGGGGATGCCACAAAACAACCCTCCTCGCCGCCCAACTCTTCTTCTGGGTCCCTCAATGGCTTGAAATTTGGCCAAAGAATCTATTTTGAGGATGTGGGCTTCTCTACTCCTGCCACCTCTGTTGCTGGGTCTGCTAGTTCTTCTTTATCATCACCATCTTCAACTTCAGCTTCTTCTGGTCCAAAGAAGGGAAGAGGTGGGTCTCTTCAACCGGCTCAGCCTCCTAGGTGTCAAGTTGAGGGCTGTAAAGTAGATCTGAGTGATGCCAAAGCTTACTATTCTAGGCACAAAGTCTGTGCCATGCACTCCAAATCCCCTACTGTTATTGTAGCTGGTCTTCAACAAAGGTTTTGCCAACAGTGTAGCAGGTCTACTCTTCAACTTCAACTTCTTGTTGCTATTTTAATATTTTACTATAATGGGATGGTGAGGTATGACAATGGTGCTTACGAAGCAACTGAGGATTCTAGGAGAATTTGCAATGGTAATATTACTAACAAGCATGTATTTTGGAGTTGGATGGCCATTATAATTGGGAAATTTCCGACCATAACATTTGGAGAACATGGTCTATCAGTCTCTGAATGTGGTTGCTATATGCAGTTTTCGCGGAGCTGGGATAGCTTTCTGGTGGCTGTTCCGAGTGTAATTTGA 663 0.4419 MASGDATKQPSSPPNSSSGSLNGLKFGQRIYFEDVGFSTPATSVAGSASSSLSSPSSTSASSGPKKGRGGSLQPAQPPRCQVEGCKVDLSDAKAYYSRHKVCAMHSKSPTVIVAGLQQRFCQQCSRSTLQLQLLVAILIFYYNGMVRYDNGAYEATEDSRRICNGNITNKHVFWSWMAIIIGKFPTITFGEHGLSVSECGCYMQFSRSWDSFLVAVPSVI. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04116 220 MobiDBLite consensus disorder prediction 42 66 - -
Seca2g04116 220 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Seca2g04116 220 MobiDBLite consensus disorder prediction 1 22 - -
Seca2g04116 220 Gene3D - 70 172 IPR036893 GO:0003677|GO:0005634
Seca2g04116 220 MobiDBLite consensus disorder prediction 42 79 - -
Seca2g04116 220 Pfam SBP domain 80 126 IPR004333 GO:0003677
Seca2g04116 220 SUPERFAMILY SBT domain 77 126 IPR036893 GO:0003677|GO:0005634
Seca2g04116 220 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 126 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04116 Seca-Chr2 124447720 124449864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04116 24 126 SBP-box Gene Family AT3G57920 51.456 1.20e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca2g04116 SBP 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04116 - - gmx:100807165 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04116 2 124447720 124449864 Seca2g04116 2 124447720 124449864 ECH