Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04115 ATGATACATAAGAGATACTTTAAGTGCATCCATGGTAACAACAGCATGGCGTGTGATGCTAGGGAACGATATACTTGTCAAATGTTAGCATTTCTTAAGTCTGAGTCCTTGGGTATGCTTGTGTTCATCATCTCTCTTCTACATAACTTGGTAGCATTTATTTTAGAAAAACTAATACCATGTTTCATAGCCTTGCCCAGATTTCATCAGCTTACCGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCTCGCCCAGCTCCCTCTTAACCTCTCGTTATGCCAGACTTTCTTCATCTATTTTTGATAATAACAACAGAGGTGGCAGCTTTCTGATGGAATTTGCTTCATACCCAAAGCTCAGTCTGAGAAATTCACTTTCAACTGAGCTAGTTCCTGGAAATCAATCCTCAACACATAGCTGGCATTGGCAAGGTAACTCAGAGACACAACCTGACCATTTCTTGCAAGGCTCAGTGGGTGGCACAAGCTTCCTTGGTGCCAGACATCCTCCAGAGGAAAGTTTCACTGGAGTCACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCACCAAGTCTTGGGTTGAACAACATGCTAAATTTCAATGGGACACCCATGACACAACTTGCTACATCATCTCATGGTGCAGCCATGCATCAACTCCCAAATACCTACGAGGTTGTCTCTGATCTTGTTCTGGGTCAAATTTCGCAGCCTCTCGATGGCCAATTCCCTGGTGAGTTTGATCTATCCCAACAGGGCAGGAGACATTATATGGATCTAGAACAGTCCAGGGCCTATGAATCTCCACACTGGTCACTTTAA 891 0.4444 MIHKRYFKCIHGNNSMACDARERYTCQMLAFLKSESLGMLVFIISLLHNLVAFILEKLIPCFIALPRFHQLTEFDQGKRSCRRRLAGHNERRRKPSPSSLLTSRYARLSSSIFDNNNRGGSFLMEFASYPKLSLRNSLSTELVPGNQSSTHSWHWQGNSETQPDHFLQGSVGGTSFLGARHPPEESFTGVTDSSCALSLLSSQTWGSRNTAPPSLGLNNMLNFNGTPMTQLATSSHGAAMHQLPNTYEVVSDLVLGQISQPLDGQFPGEFDLSQQGRRHYMDLEQSRAYESPHWSL. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04115 296 SUPERFAMILY SBT domain 66 100 IPR036893 GO:0003677|GO:0005634
Seca2g04115 296 ProSiteProfiles Zinc finger SBP-type profile. 67 95 IPR004333 GO:0003677
Seca2g04115 296 Pfam SBP domain 67 94 IPR004333 GO:0003677
Seca2g04115 296 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 67 235 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04115 Seca-Chr2 124445908 124446974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04115 67 296 SBP-box Gene Family AT2G42200 38.163 2.68e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca2g04115 SBP 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04115 - - gmx:100780949 354.369