Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04114 ATGGTTTGCGACTTCCTCCATGTGTATATCAACCTCGTTGTCTTCGCGTCAATTTTGATTTCTCAGGGCTTGGCGTTCACTCTTTCATCTGAAGTCTCAGCTCTCCAGGATCTATACAGGGCCTTAAACTACCCACCGACTCTCCAAGGATGGAATGGTAACGATCCTTGTGAGGAGTCTTGGACAGGAGTTGCTTGTTCTGGGTCATCAGTTATACACCTAAAAATTCGAGGATTAAACCTCACTGGGTGTCTTGGAAGCATGCTCTATAATCTACGTAACTTGAAGCAACTTGATGTCAGTTCTAATAACATAGTGGGCGAAATACCATTCGGCTTACCTCCGAATGTCACACATATGAATTTAAGCCACAATTTCTTAAATGGACCCATTGGTGACGTATTTACTGGCTTAAACGATCTCAGAGAAATGGACCTTTCATACAATAATTTCTCAGGAGATCTACCACGTTCATTTGGTTCCTTAACAAACCTTGCTAGATTGTTCCTGCAGAATAACAGATTCACTGGATCAGTAGTCTACCTGGCAGAACTTCCACTTACAGATACTGTACCAGTTGAGCACAATATTAGTCGCCCACCCACAACTCATGCAACTGCCATCAAGAACTATCCTCCTCCCAAAGTAAGTGAGCACAAGAAGAAACAAATAGGTCCTGGGGGAATAGCTTTTATGGTTGGTGGAGGAACACTAATGGCTACAGGTATGGCACTCTTTGTTGCAATCCGTTTGAGTAAACAGCGACTACAAAGCCTGCACTTCAATAACATAGAAAGCAACCACAGCTCTTTGCATTCTCATCAGACCAGTGCAACCATAGAGGTCTCTTCTACCGCACTGGATGAGAGCCCACAAATCCCTCCTTTTAATGCCGCATCCCTTTTGGGTCCAATGCGACTTCCTTCTCTGCTCCATACCAATGTAAAGGAATCATCAAGAAGAAGTTTTTCCAAAAGAGGCAGATCCACTGGAGGGACGAAAATTTACACGGTCGCGGAGCTTGAGTTGGCTACCAACTGCTTCAATGAAGGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACAAAGCTGAATTTCCTGATGGCAAAATTTTGGCCGTGAAGAATATAAACATGGCAGGCGTGTCTTACAGAGAAGAGGAGAAGTTCTTGGATTTCATCTGCACGGCTTCCCGACTGAAGCACCCCAACATCGTAGCACTCAATGGTTACTGTTTGGAGCGCGGAAAGCATCTTCTTGTTTACGATTACGTTGGAAATTTAACTCTCAACGATGCTCTTCACAGTGGAGCAAACAAACCTCTATCGTGGGTCCAACGTCTTCGAATCGCTCTAGGTGTTGCTCAGGCTCTGGACTATTTGCACTCAGCATGCTGCCCTCCTGTGGCCCATGGTAACTTGAAGGCTGCCAATGTTCTGCTGGATGAAAATTCGATGCCTCGTGTTTGTGACAGTAGCTTGGGTATTTTGAGACCACTGAGGAGCAATCAAGCTACTGAGGGTATCATTAGAGAGAGAGGGTCCGTTGCGCCTGGCCATGGCCTAGCAGGATCCAGCAGCAGAAGGGGAGACGCCTTTGCCTTTGGGGTATTGCTTCTGGAACTGTTAACAGGAAGGAAACCTTTCGATGGGCCAAGGGAGGAGCAATATCTGGTGAAATGGGCTTCACCCAAGCTTAATGATAGCGCGAGTTTGGAACAGATCGTGGATCCTTGTATGAAGAGGACATTTTCATCCAAGGCTCTTTGTCTTTATGCTGGTATCATCTCCCTCTGTATACAGCCTTTAAGGCAATTCCGTCCACCAATGTCTGGAGTTGTGGACTCTCTTGTATCTCTTTCTCAAAAGTTCAACTATACAAAGAGCGGTGTAGCAGATGGCTCTGAATTTGATCTGTTTGAGAGATCGTTCCGTTCAAACAACACATGCTTTATAAGTACACCGGCATTGAGCCATGCAGAGAAAATCATGGTGGACCCTGCAGAACGTAGGTACTTGGAGGATGAGGATTCATCACTCATGAAAACCATTAAGGGTGCAACAACTGGTTTAGTTGCTGGCACTGTCTGGGGTACTGTAGTTGCCACCTGGTATGATGTTCCTCGTGTTGAGAGAAATGTTGCTCTTCCAGGGCTAATAAGAACTTTCAAGATGATGGGCAACCATGGATTGACCTTTGCTGCTATAGGAGGAGTCTACATAGGTGTGGAACAGTTGGTGCAGAACTTTAGGATGAAGAGGGATCTTGTAAATGGAGCTGTTGGTGGATTTGTTGCTGGTGCAACTATTCTGGGTTACAAAGGAAGGAGCATCTCAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCAGTTCTTGATTTTGGGGGCCAGACAATTAAACATGATACTGGGAAGGAGTATGCTGCATACACAGTAAAGAAAAGACCCAGTACTGATGCATGA 2475 0.4549 MVCDFLHVYINLVVFASILISQGLAFTLSSEVSALQDLYRALNYPPTLQGWNGNDPCEESWTGVACSGSSVIHLKIRGLNLTGCLGSMLYNLRNLKQLDVSSNNIVGEIPFGLPPNVTHMNLSHNFLNGPIGDVFTGLNDLREMDLSYNNFSGDLPRSFGSLTNLARLFLQNNRFTGSVVYLAELPLTDTVPVEHNISRPPTTHATAIKNYPPPKVSEHKKKQIGPGGIAFMVGGGTLMATGMALFVAIRLSKQRLQSLHFNNIESNHSSLHSHQTSATIEVSSTALDESPQIPPFNAASLLGPMRLPSLLHTNVKESSRRSFSKRGRSTGGTKIYTVAELELATNCFNEGNLLGEGSLGPVYKAEFPDGKILAVKNINMAGVSYREEEKFLDFICTASRLKHPNIVALNGYCLERGKHLLVYDYVGNLTLNDALHSGANKPLSWVQRLRIALGVAQALDYLHSACCPPVAHGNLKAANVLLDENSMPRVCDSSLGILRPLRSNQATEGIIRERGSVAPGHGLAGSSSRRGDAFAFGVLLLELLTGRKPFDGPREEQYLVKWASPKLNDSASLEQIVDPCMKRTFSSKALCLYAGIISLCIQPLRQFRPPMSGVVDSLVSLSQKFNYTKSGVADGSEFDLFERSFRSNNTCFISTPALSHAEKIMVDPAERRYLEDEDSSLMKTIKGATTGLVAGTVWGTVVATWYDVPRVERNVALPGLIRTFKMMGNHGLTFAAIGGVYIGVEQLVQNFRMKRDLVNGAVGGFVAGATILGYKGRSISTALSAGSALAFTSAVLDFGGQTIKHDTGKEYAAYTVKKRPSTDA. 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04114 824 FunFam Leucine-rich repeat receptor-like protein kinase 426 629 - -
Seca2g04114 824 Gene3D Transferase(Phosphotransferase) domain 1 427 639 - -
Seca2g04114 824 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 622 IPR046959 -
Seca2g04114 824 Pfam Tim17/Tim22/Tim23/Pmp24 family 683 791 - -
Seca2g04114 824 Pfam Protein kinase domain 349 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04114 824 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 313 425 - -
Seca2g04114 824 Gene3D Ribonuclease Inhibitor 27 197 IPR032675 -
Seca2g04114 824 MobiDBLite consensus disorder prediction 197 222 - -
Seca2g04114 824 Gene3D Phosphorylase Kinase; domain 1 311 425 - -
Seca2g04114 824 ProSiteProfiles Protein kinase domain profile. 348 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04114 824 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Seca2g04114 824 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 131 - -
Seca2g04114 824 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Seca2g04114 824 SUPERFAMILY L domain-like 28 186 - -
Seca2g04114 824 SUPERFAMILY Protein kinase-like (PK-like) 323 618 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04114 Seca-Chr2 124426781 124442571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04114 9 660 Strubbelig Receptor Gene Family AT5G06820 46.849 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca2g04114 Pkinase 1.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04114 - - gmx:100816202 817.379